cluster # 5431

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Schistosoma mansoni
cluster # 5431 cluster # 5431 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5431#0 length = 803 sequences # 2

consensus_5431#1 length = 427 sequences # 1

consensusID : consensus_5431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 803
fasta sequence

                              [GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAATCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATTATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTTTATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGAT-AAAATATTT]

[+] EMBL CD081582             [GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAATCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATTATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTTTATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGAT AAAATATT ]
[-] EMBL CD075406             [                                                                                                                                                                                                aCTACT   TTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTGATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATCAGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATGGTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTGAAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAGCATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAACCAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAATAACTATCTTAAGATAAAAATATTT]




>consensus_5431#0
GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAA
TCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATT
ATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTT
TATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTG
ATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATC
AGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATG
GTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTG
AAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAG
CATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAAC
CAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACAC
CAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAAC
CACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAA
CTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGGTAACTATCTATGGTCTTTCCATAAAAT
AACTATCTTAAGATAAAATATTT

consensusID : consensus_5431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCATGGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACAATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAAATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAAATAAACGTATACCGAA]

[+] EMBL CD152387             [TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCATGGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACAATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAAATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAAATAAACGTATACCGAA]




>consensus_5431#1
TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACACCAATTAATG
TTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAACCACCCAAAT
TACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAACTAAGTCAA
ATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCATGGTTTATCC
CACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACAATAAAAGTG
AATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAAATGGGAAAA
TGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAAATAAACGTA
TACCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5431#0      GCCATATTCGGCCGAGCGAAAGTTCAGATTCGTCTGTTCAATCAGTAGGACCAGTCATAA 60
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      TCGACAAAGAAAAAAATTTCAAATGTTCCCGGGACCAGTATATTAAACAACACAATAATT 120
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      ATAATAAAAATCTACCTTCAAAGCTAGATGAATTGGAAAGCAAGTTATTGAAGCATCCTT 180
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      TATTATTATTTCCCTACTTACTTCAGTATTTACCTCTTTCCGTTTCGAAGACAGTAATTG 240
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      ATTTGTTAGATCGGCCACATAAAGAAAGACTGATAGATTTGATTAAAATAGCAAAACATC 300
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      AGAATATTCATGAAAATGTTCAAAATAAAACAGGGATGAAGTTATCTAATCCATCAAATG 360
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      GTGGTTTAATAAGTGATAGTAAGTTAAACTCTTCAGTTATCTCAATCAAATCAAAAGTTG 420
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      AAGATGAAGATTTCATTGAACCAGAAATGTTCATAGAATACCCATCAGTCAAGGAAGAAG 480
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      CATTAGCATTTTGTGAATTTATTAAGAATTTGGATGGTTCATCAATTGACAATCCGGAAC 540
consensus_5431#1      ------------------------------------------------------------
                                                                                  

consensus_5431#0      CAACAACACTAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACAC 600
consensus_5431#1      ---------TAGCAAGTTTATTTGCTGGAACACATGAAGCTCAACCCCCAGTATCAACAC 51
                               ***************************************************

consensus_5431#0      CAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAAC 660
consensus_5431#1      CAATTAATGTTGTTGAATTAATTAATTTACCATATGAATTAAGACATTCTGTTAAAGAAC 111
                      ************************************************************

consensus_5431#0      CACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAA 720
consensus_5431#1      CACCCAAATTACTCTGTGATAAACATTCTTTGACTGATTCAGAGAGTTTACCACGTATAA 171
                      ************************************************************

consensus_5431#0      CTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGG----TAACTATCTATGGTCTT-TCCAT 775
consensus_5431#1      CTAAGTCAAATGCAGCTAAAAAGCAAGAAAAGAATTTTGAAAGATTACATTATGGTGCAT 231
                      ********************************     * *     **   * *  * ***

consensus_5431#0      AAAATAACTATCTTAAG--ATAAAATATTT------------------------------ 803
consensus_5431#1      GGTTTATCCCACCCAAACAATGGAAAGTTGTCAAAGATAATGGTGCGAATACGATACACA 291
                          ** *   *  **   **  **  **                               

consensus_5431#0      ------------------------------------------------------------
consensus_5431#1      ATAAAAGTGAATTTGACAGTGTTAAAACTAAATCATATAAGGAACTAATAGAAAGCTTAA 351
                                                                                  

consensus_5431#0      ------------------------------------------------------------
consensus_5431#1      ATGGGAAAATGAAAGAGACACATGGATACGATGCCTTTATGGAATTTATGCAGAATAAAA 411
                                                                                  

consensus_5431#0      ----------------
consensus_5431#1      ATAAACGTATACCGAA 427