cluster # 5500

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5500 cluster # 5500 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5500#0 length = 462 sequences # 1

consensus_5500#1 length = 314 sequences # 2

consensusID : consensus_5500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGGATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATACTCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTATATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAAGAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTGGTTGACATTTGCAAAGGAACAGTCAAGTTCGATTGATATTTTGCAAACTAAGTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATACATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT]

[+] EMBL CD156251             [ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGGATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATACTCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTATATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAAGAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTGGTTGACATTTGCAAAGGAACAGTCAAGTTCGATTGATATTTTGCAAACTAAGTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATACATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT]




>consensus_5500#0
ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGG
ATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATAC
TCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTAT
ATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAA
GAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTG
GTTGACATTTGCAAAGGAACAGTCAAGTTCGATTGATATTTTGCAAACTAAGTATTTACT
GTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATACATTCGGTTG
TCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT

consensusID : consensus_5500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence

                              [GTCCGGCAACAGCAGATCGAGAAGAAAGGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA]

[-] EMBL CD123419             [GTCCGGCAACAGCAGATCGAGAAGAAAGGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA]
[-] EMBL CD123394             [GTCCGGCAACAGCAGATCGAGAAGAAAAGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGATTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA]




>consensus_5500#1
GTCCGGCAACAGCAGATCGAGAAGAAAGGAACGGGAACAGAAAGAAATTGGTATGGAGGT
GAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTG
GACAACTGACTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGA
TTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTA
AATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATA
AAACAAAATCTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5500#0      ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGG 60
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      ATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATAC 120
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      TCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTAT 180
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      ATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAA 240
consensus_5500#1      -------------------------------GTCCGGCAAC-AGCAGATCGAGAAGAAAG 28
                                                     **     *   ** ******** *** * 

consensus_5500#0      GAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTG 300
consensus_5500#1      GAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTG 88
                      **** * ** *****  ************* ****** **************** *****

consensus_5500#0      GTTGACATTTGCAAAGGAACAGTCAAGTTC---------GATTGATATTTTGCAAACTAA 351
consensus_5500#1      ATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCT-- 146
                       ****************************          ** *** ********* **  

consensus_5500#0      GTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATAC 411
consensus_5500#1      GTGTTTACTGCATGATTCTCAGATTTTACTGAGA--TTCTGAAATTTTTTGTTCTCATTC 204
                      ** *******  ** ***************  **  ** ** ** *** ****   ** *

consensus_5500#0      ATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT--------- 462
consensus_5500#1      ACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAA 264
                      * *    * *         *  *    **      *   ***  ** * **         

consensus_5500#0      --------------------------------------------------
consensus_5500#1      ATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA 314