cluster # 553

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Schistosoma mansoni
cluster # 553 cluster # 553 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_553#0 length = 448 sequences # 1

consensus_553#1 length = 270 sequences # 1

consensusID : consensus_553#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGGGTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAAAAAATGGATTACAAGTGGTCCTAGTGACCTGAGAGCGTGACGGAAGTGCCCAAGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTGTGAGTAACTTTCGTGTTAGCTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGTGCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGTTATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTACGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT]

[+] EMBL CD197944             [AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGGGTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAAAAAATGGATTACAAGTGGTCCTAGTGACCTGAGAGCGTGACGGAAGTGCCCAAGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTGTGAGTAACTTTCGTGTTAGCTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGTGCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGTTATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTACGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT]




>consensus_553#0
AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGG
GTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAAA
AAATGGATTACAAGTGGTCCTAGTGACCTGAGAGCGTGACGGAAGTGCCCAAGGGACAAC
TGCATGAGGCCGGTCACACACAACCCTTTTGTGAGTAACTTTCGTGTTAGCTCCGTACTT
GTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGTGCATTTTCAG
GGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGTTATGCTGGTT
ATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTACGACTTTGCC
CTCGGACCTTCGGTTCGCCGCTTTCAGT

consensusID : consensus_553#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [GTCTAGTGGTTAATCGCTCTGACGCGAGACTGGTAGGTTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAATAAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCAACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATACTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGTATAG]

[+] EMBL BG931107             [GTCTAGTGGTTAATCGCTCTGACGCGAGACTGGTAGGTTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAATAAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCAACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATACTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGTATAG]




>consensus_553#1
GTCTAGTGGTTAATCGCTCTGACGCGAGACTGGTAGGTTTTAGGTTGGTGGGATGGTGGA
TGTGCACTGCCGAGGAGTCCCACAATAAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTT
CCCTGGTGGTCTAACTCACACTTTCAACTAAAAATTAATGCTTTCCAGATTCTCAAAACT
CATTCACTAGGTGTACAATTTGTATACTACGTTTTAAATCATACTTTGTATGTCACGGTT
AATAATAATAGTGTTAAAATTACTGTATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_553#0      AATTGAAGAGGGAGATTGATTATGAACACAGTGATCTTGAGTGCTGTTAGAGGTATGAGG 60
consensus_553#1      -------------------------GTCTAGTGGT--TAATCGCTCT----GACGCGAGA 29
                                                  **** *  * *  *** *    *    *** 

consensus_553#0      GTGGTTAACACTTCCCGGTTTCTCACACCGTGGAAGGGTTCTTCTGGGGTTACCTAAAA- 119
consensus_553#1      CTGGTAGG---TTTTAGGTTGGTGGGATGGTGGATGTGCACTGCCGAGGAGTCCCACAAT 86
                      ****      **   ****  *   *  ***** * *  ** * * **   ** * ** 

consensus_553#0      -----AAAATGGATTACAAGTGGTCCTAG---TGACCTGAGAGCGTGACGGAAGTGCCCA 171
consensus_553#1      AAGAGGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCCTGGTGGTCTAACTCACACTTTCA 146
                           *** **    * **** * * **   *  ****   *  * **  *      **

consensus_553#0      AGGGACAACTGCATGAGGCCGGTCACACACAACCCTTTTG-TGAGTAACTTTCGTGTTAG 230
consensus_553#1      ACTAAAAATTAATGCTTTCCAGATTCTCAAAACTCATTCACTAGGTGTACAATTTGTATA 206
                     *   * ** *        ** *   * ** *** * **   *  **        ***   

consensus_553#0      CTCCGTACTTGTTGAGACCTTACCACCGAAGACGGAAATCCGTGGGATAAGGCGAGGTGT 290
consensus_553#1      CTACGTTTTAAATCATACTTTGTATGTCACGGTTAATAATAATAGTGTTAAAATTACTGT 266
                     ** ***  *   * * ** **       * *    * *    * *  * *       ***

consensus_553#0      GCATTTTCAGGGTCGACCTTTTCTAACCCCCCCCTCCTTGTGAGAAGGCAGCATCGCTGT 350
consensus_553#1      ATAG-------------------------------------------------------- 270
                       *                                                         

consensus_553#0      TATGCTGGTTATCCGAAGGAAACACCTTACTGCCGTTACACCTCTGTACAGTCAGTAGTA 410
consensus_553#1      ------------------------------------------------------------
                                                                                 

consensus_553#0      CGACTTTGCCCTCGGACCTTCGGTTCGCCGCTTTCAGT 448
consensus_553#1      --------------------------------------