cluster # 5533

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Schistosoma mansoni
cluster # 5533 cluster # 5533 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5533#0 length = 453 sequences # 2

consensus_5533#1 length = 347 sequences # 1

consensusID : consensus_5533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 453
fasta sequence

                              [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATATCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT]

[+] EMBL CD196371             [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATATCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT]
[+] EMBL CD196376             [TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTTATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCCATGAAGTTGGTGTGTGGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATCTTTCA TCCGATTCAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGATGCCTCTA                                                                                     ]




>consensus_5533#0
TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTT
ATGAATTCCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTTCC
ATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGTGG
TGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCTGT
GCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAATC
TTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGTGA
TGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATATC
CTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT

consensusID : consensus_5533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [TCCGGTCTGTTGATCTCAAAGTTGGGCATTTACTGAGTCTTTCATCCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTACTGATAGTAGTGTGATGGCTCTGTAGTTTCCCATATTTGCTCAGATCTCCTTTCTTGGTGATATATCCTTCTTTTCAGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGATTAGAACATGGAGCATAATAGGCAGGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTACTCTTGATTTGTCTGAAGACTGGCCACCCTGATTTCTTCAGATCGTTGGTAGAGTGACAGCTATATGAAGGTC]

[-] EMBL CD137052             [TCCGGTCTGTTGATCTCAAAGTTGGGCATTTACTGAGTCTTTCATCCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTACTGATAGTAGTGTGATGGCTCTGTAGTTTCCCATATTTGCTCAGATCTCCTTTCTTGGTGATATATCCTTCTTTTCAGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGATTAGAACATGGAGCATAATAGGCAGGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTACTCTTGATTTGTCTGAAGACTGGCCACCCTGATTTCTTCAGATCGTTGGTAGAGTGACAGCTATATGAAGGTC]




>consensus_5533#1
TCCGGTCTGTTGATCTCAAAGTTGGGCATTTACTGAGTCTTTCATCCGATTCAGCAACAC
TCTGTTGAAAACTTTTACTGGTACTGATAGTAGTGTGATGGCTCTGTAGTTTCCCATATT
TGCTCAGATCTCCTTTCTTGGTGATATATCCTTCTTTTCAGTCTTGTCACCACTTGTCCT
TCCTCCTAAATCCTGATTAGAACATGGAGCATAATAGGCAGGTTATTCCCTTTGGCCTCA
GACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTACTCTTGATTTGTCTGAAGACTGGCCA
CCCTGATTTCTTCAGATCGTTGGTAGAGTGACAGCTATATGAAGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5533#0      TTGTGAGACTTCAGTCTGTCAGCTGTCCTCCATACACGACTTTTCGCTGTAGTCCGTCTT 60
consensus_5533#1      ---------TCCGGTCTGT----TGATCTCAAAGTTGGGCATTT-ACTG-AGTCTTTCAT 45
                               * * ******    **  *** *     * * ***  *** ****  ** *

consensus_5533#0      ATGAATT--CCGGATGGTGTTGACGATTTTCTCACCTACACCGTAGTGTTGAAGAAGGTT 118
consensus_5533#1      CCGATTCAGCAACACTCTGTTGAAAACTTTTACTGGTAC-TGATAGTAGTGT-GATGGCT 103
                        ** *   *   *   ******  * ***  *   ***    ****  **  ** ** *

consensus_5533#0      CCATGAGGTTCTCCCATCCACACTATCAATACTTCCTCATAGTCAATGAAGTTGGTGTGT 178
consensus_5533#1      CTGT-AGTTTCCCATATTTGCTC---AGATCTCCTTTCTTGGTGATATATCCTTCTTTTC 159
                      *  * ** *** *  **   * *     **      ** * ** *   *   *  * *  

consensus_5533#0      GGTGTCGAATTCAATTCAATTGATTGTTCAACGATGATCTGTAGTGTAGCAGTTCGGTCT 238
consensus_5533#1      AGTCTTGTCACCACTTGTCCTTCCTCCTAAATCCTGAT-TAGAACATGG-AGCATAATAG 217
                       ** * *    ** **    *   *  * **   **** *  *   * * **     *  

consensus_5533#0      GTGCACGACCAGTCCTTATGGAATCCGTCCTGTTGATCTCGAAGCTGTACGTCTACTGAA 298
consensus_5533#1      GCA---GGTTATTCCCTTTGGCCTCAGACTGGTATGTTGTCAGGTCCTGCTGCTTTCTTA 274
                      *     *   * *** * ***  ** * *  **   *    * *   * *  **     *

consensus_5533#0      TCTTTCACTCCGATTTAGCAACACTCTGTTGAAAACTTTTCCTGGCACTGACGGTAGTGT 358
consensus_5533#1      CTCTTGATTT--GTCTGAAGACTGGCCACCCTGA---TTTCTTCAGATCGTTGGTAGAGT 329
                         ** * *    * *    **   *       *   **** *   *  *  ***** **

consensus_5533#0      GATGCCTCTATAGTTCTCACATTCGCTCGAATCTACTTTCTTTGGTATCTTGATGAGATA 418
consensus_5533#1      GACAGCTATATGAAGGTC------------------------------------------ 347
                      **   ** ***     **                                          

consensus_5533#0      TCCTTCTTTTCAGTCTGTCACCGGTATTTTTTCTT 453
consensus_5533#1      -----------------------------------