cluster # 556

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Schistosoma mansoni
cluster # 556 cluster # 556 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_556#0 length = 342 sequences # 1

consensus_556#1 length = 251 sequences # 1

consensusID : consensus_556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGTATGTTCGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG]

[+] EMBL CD180609             [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGTATGTTCGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG]




>consensus_556#0
AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGG
ACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGT
TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC
CTGTATGTTCGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTGG
AGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAG
TTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG

consensusID : consensus_556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [GTTTAAATGGCTATCATACTAAACAGTAATAGTTTTTAAAAAAGATGGATGGAACTAAAAAGAAAAATGATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAGCAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTGAAATTGCTGAATTAAAATAAAAAAAATGAAACAAGCCCAAATTGAATTGTGATGAAGCACAAGAAAACATTACAAGAACAA]

[+] EMBL CD171418             [GTTTAAATGGCTATCATACTAAACAGTAATAGTTTTTAAAAAAGATGGATGGAACTAAAAAGAAAAATGATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAGCAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTGAAATTGCTGAATTAAAATAAAAAAAATGAAACAAGCCCAAATTGAATTGTGATGAAGCACAAGAAAACATTACAAGAACAA]




>consensus_556#1
GTTTAAATGGCTATCATACTAAACAGTAATAGTTTTTAAAAAAGATGGATGGAACTAAAA
AGAAAAATGATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAGCAGTACAATA
TGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTGAAATTGCTGA
ATTAAAATAAAAAAAATGAAACAAGCCCAAATTGAATTGTGATGAAGCACAAGAAAACAT
TACAAGAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_556#0      AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGG 60
consensus_556#1      ------------------------------------------------------------
                                                                                 

consensus_556#0      ACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGT 120
consensus_556#1      GTTTAAATGGCTATCATACTAAACAGTAAT-AGTT---TTTAAAAAAGATGGATGGAACT 56
                       **** **   *** * * *  ***   * ** *     **   * ****   * ** *

consensus_556#0      TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC 180
consensus_556#1      AAAAAGAAAAAT------GATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAG 110
                       * *      *      * ** ** * *  *** *      *     ****     ** 

consensus_556#0      CTGTATGTT-CGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTG 239
consensus_556#1      CAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTG 170
                     * ***   *  *   * *   * * **   *     * *    *     *  **** ***

consensus_556#0      GAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCA 299
consensus_556#1      AAATTGCTGAATTAAAATAAAAA------AAATGAAACAAGCCCAAAT----TGAATTGT 220
                      * *   *    * ***  *  *      * *    *      ****     * *  *  

consensus_556#0      GTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG 342
consensus_556#1      GATGAAGCACAAGAAAACATTACAAGAACAA------------ 251
                     * *  *  ** *  * * ** *   *** *