cluster # 5604

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Schistosoma mansoni
cluster # 5604 cluster # 5604 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5604#0 length = 513 sequences # 2

consensus_5604#1 length = 248 sequences # 1

consensusID : consensus_5604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence

                              [ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAGAATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGATGATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACT--TGTGTGTGTTGTCATTTTATATTCTTTTGTAGC-TAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT]

[+] EMBL CD063274             [ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAGAATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGATGATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACT  TGTGTGTGTTGTCATTTTATATTCTTTTGTAGC T                                                ]
[-] EMBL CD111824             [                                                                                                                                                                               AAGATTTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAATGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTAACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGT GCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT]




>consensus_5604#0
ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAG
AATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGAT
GATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGAT
TTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAA
TGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTA
ACAACAGGATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGAT
TTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATCT
TTGTATGTACTTGTGTGTGTTGTCATTTTATATTCTTTTGTAGCTAAGTAATCATTTTGT
ACAAGGTTACATGGTTACTGTTTTGTTTGTTTT

consensusID : consensus_5604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [ATTAAACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAATCACT]

[-] EMBL CD141702             [ATTAAACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATACCATGGATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAATCACT]




>consensus_5604#1
ATTAAACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGAT
GAGGATTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATACCATGG
ATCTTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCA
TTTTGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCA
GAATCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5604#0      ATTGTAGGTGATATGAATTCTATTTTGCCGAATTCAAAAGATAATACAATATTAGAAAAG 60
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      AATACTGATAAAGAGAACAATGAACATACAGATAAATTTGTTCACAATGATGGTGATGAT 120
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      GATACTGAGGATGATTTAATTGAAATTACTGAAGATCCTATGATTAAACTAAATGAAGAT 180
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      TTGGAAAATGGTGTCAATACTAGTAATACTAGTATTAGTAATAATAGTACTAAACGTAAA 240
consensus_5604#1      ------------------------------------------------------------
                                                                                  

consensus_5604#0      TGTCTTGATCAAGACAATTTGAATAGAATAAAGAAGAAATTACGATTTGATAAAGAATTA 300
consensus_5604#1      -------------------------------------------------------ATTAA 5
                                                                             * * *

consensus_5604#0      ACAACAGG-ATCATCATCCATTATCGTACCGGTTGCTGACGACGACGACAATGATGATGA 359
consensus_5604#1      ACAACAGGGATCGTCTTCCATTATCGTGCCGGTTGCTGGCGCCGACGCCAATGATGAGGA 65
                      ******** *** ** *********** ********** ** ***** ********* **

consensus_5604#0      TTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATATACCATGGATC 419
consensus_5604#1      TTTAATCATTATTGAATAAATCAATGACTGATATATATATATATATATA--CCATGGATC 123
                      *************************************************  *********

consensus_5604#0      TTTGTATGTACTTGTGTGTGT--TGTCATTTTATATTCTTTTGTAGCTAAGTAATCATTT 477
consensus_5604#1      TTTGTATGTACTTGTGTGTGTGTTGTCATTTTATATTCTTTTGTGCAAAAGTAATCATTT 183
                      *********************  *********************    ************

consensus_5604#0      TGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTT------------------------ 513
consensus_5604#1      TGTACAAGGTTACATGGTTACTGTTTTGTTTGTTTTGCTCTCCTCTCTCCTAAAGCAGAA 243
                      ************************************                        

consensus_5604#0      -----
consensus_5604#1      TCACT 248