cluster # 5611

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Schistosoma mansoni
cluster # 5611 cluster # 5611 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5611#0 length = 537 sequences # 1

consensus_5611#1 length = 336 sequences # 2

consensusID : consensus_5611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGAACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGAGAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTGTTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTGGAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTGTGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGACCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTCGCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTTAGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAGGTGTACAGAGG]

[+] EMBL CD089189             [ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGAACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGAGAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTGTTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTGGAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTGTGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGACCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTCGCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTTAGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAGGTGTACAGAGG]




>consensus_5611#0
ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGAACACACTCATCCAA
TGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGAGAGACCAGATTGAT
AGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTGTTGCCTCACCCTCT
CTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTGGAAGATTCAGTGTG
AATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTGTGTGTATGTGTGAA
TTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGACCAATCAATATGTC
ATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTCGCGTTTGTGGTGTC
GAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTTAGGAGATAAATAAT
GCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAGGTGTACAGAGG

consensusID : consensus_5611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 336
fasta sequence

                              [TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAGTGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG]

[+] EMBL CD088453             [TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGG                                                ]
[+] EMBL CD088460             [ GAATGGGTGAGTGAGTGAGTGAGTGAGTGAGTGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGACAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAGTGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG]




>consensus_5611#1
TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGA
GCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGA
GAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTG
TTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTG
GAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAG
TGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5611#0      --------------ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGA 46
consensus_5611#1      TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGA 60
                                    * ** **** * *  ** ****** *********************

consensus_5611#0      ACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGA 106
consensus_5611#1      GCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGA 120
                       *****  **** ****** ********************************* ******

consensus_5611#0      GAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTG 166
consensus_5611#1      GAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTG 180
                      ************** ********* ** ********** *** *****************

consensus_5611#0      TTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTG 226
consensus_5611#1      TTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTG 240
                      ********** *************************************** *********

consensus_5611#0      GAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTG 286
consensus_5611#1      GAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAG 300
                      ************* ***** **** ********************* *** ****  * *

consensus_5611#0      TGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGA 346
consensus_5611#1      TGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG------------------------ 336
                      ** **  *** *       ****** *  * * ***                        

consensus_5611#0      CCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTC 406
consensus_5611#1      ------------------------------------------------------------
                                                                                  

consensus_5611#0      GCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTT 466
consensus_5611#1      ------------------------------------------------------------
                                                                                  

consensus_5611#0      AGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAG 526
consensus_5611#1      ------------------------------------------------------------
                                                                                  

consensus_5611#0      GTGTACAGAGG 537
consensus_5611#1      -----------