cluster # 5668

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Schistosoma mansoni
cluster # 5668 cluster # 5668 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5668#0 length = 671 sequences # 2

consensus_5668#1 length = 288 sequences # 1

consensusID : consensus_5668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence

                              [GCCATAAAAACTGTATAAATCTTTCTCTGTAAAATAAGGTCACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCTGTTTTTTCAGNTATTCACATNCCCAGTAAGG]

[+] EMBL CD075475             [GCCATAAAAACTGTATAAATCTTTCTCTGTAAAATAAGGTCACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAA                                         ]
[-] EMBL CD081741             [                                                                                             TAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCTGTTTTTTCAGNTATTCACATNCCCAGTAAGG]




>consensus_5668#0
GCCATAAAAACTGTATAAATCTTTCTCTGTAAAATAAGGTCACGCCTCTCCCTGAACCAA
TTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAAACAATTTT
AACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATC
TTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTC
CTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCT
CCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGG
TGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCG
CAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGA
TGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTG
GAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCAC
ATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCTGTTTTTTCAGNTATTCACAT
NCCCAGTAAGG

consensusID : consensus_5668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGTCACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGGGGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC]

[+] EMBL AI394921             [TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGTCACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGGGGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC]




>consensus_5668#1
TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGT
CACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAA
AAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTG
ACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGG
GGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5668#0      -------------------GCCATAAAAACTGTATAAATC-TTTCTCTGTAAAATAAGGT 40
consensus_5668#1      TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGT 60
                                         ** * ***********   *  *******************

consensus_5668#0      CACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAA 100
consensus_5668#1      CACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAA 120
                      ********** ****** *************  ***************************

consensus_5668#0      AAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTG 160
consensus_5668#1      AAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTG 180
                      *********** ************************************************

consensus_5668#0      ACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGG 220
consensus_5668#1      ACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGG 240
                      ****************** ***** ***************** *********** *****

consensus_5668#0      GGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGA 280
consensus_5668#1      GGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC------------ 288
                      ************ ** ******** * ****** *  ****** * **            

consensus_5668#0      GGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGG 340
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      CTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGA 400
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      TCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACC 460
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      GTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAA 520
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      AGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCT 580
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      CTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCT 640
consensus_5668#1      ------------------------------------------------------------
                                                                                  

consensus_5668#0      GTTTTTTCAGNTATTCACATNCCCAGTAAGG 671
consensus_5668#1      -------------------------------