cluster # 5682

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Schistosoma mansoni
cluster # 5682 cluster # 5682 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5682#0 length = 424 sequences # 2

consensus_5682#1 length = 358 sequences # 1

consensusID : consensus_5682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT]

[+] EMBL CD121362             [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT]
[+] EMBL CD121339             [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTGTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTG              ]




>consensus_5682#0
AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTG
TTTTCTCTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCA
TATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCAC
TTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACA
ATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTT
TCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATT
TTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAA
CGAT

consensusID : consensus_5682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAATGGATCCTCAAATAAATACTTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGCCTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCTATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAAACGCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCAGTTCAATACAGGAGTTATTATTATGACCTTTATGTTTTTCATTTTCATATCTGCCAAGCT]

[+] EMBL CD117325             [CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAATGGATCCTCAAATAAATACTTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGCCTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCTATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAAACGCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCAGTTCAATACAGGAGTTATTATTATGACCTTTATGTTTTTCATTTTCATATCTGCCAAGCT]




>consensus_5682#1
CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAA
TGGATCCTCAAATAAATACTTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGCC
TACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCTA
TAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAAA
CGCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCAGT
TCAATACAGGAGTTATTATTATGACCTTTATGTTTTTCATTTTCATATCTGCCAAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5682#0      ---------------------------------------------AAATAAACGGATTTC 15
consensus_5682#1      CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAA 60
                                                                    **     * **   

consensus_5682#0      AAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGC 75
consensus_5682#1      TGGATCCTCAAATAAATAC-TTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGC 119
                         **  *  **  ** ** ** **** ********* ** ***** ***** *******

consensus_5682#0      CCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCT 135
consensus_5682#1      CTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCT 179
                      * ****** **** ******************************* *** **********

consensus_5682#0      ATAAATTTACCTGCTCATGT--------TACATTGGCCGCACAAAGCGAGCACTTTCTAA 187
consensus_5682#1      ATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAA 239
                      ********** ***** ***        *******  ** ******* * ******* **

consensus_5682#0      AAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTA 247
consensus_5682#1      AC-GCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCA 298
                      *  ** ********** ** *** *    * * *** * ******* ** ***   ** *

consensus_5682#0      GTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATA 307
consensus_5682#1      GTTCAATACAGGAGTTATT-----ATTATGACCTTTATGTTTTTCA----TTTTCATATC 349
                      **** *********   **     * * *** *     * *    *    *****  ** 

consensus_5682#0      AAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCA 367
consensus_5682#1      TGCCAAGCT--------------------------------------------------- 358
                          **  *                                                   

consensus_5682#0      TTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT 424
consensus_5682#1      ---------------------------------------------------------