cluster # 5719

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Schistosoma mansoni
cluster # 5719 cluster # 5719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5719#0 length = 797 sequences # 2

consensus_5719#1 length = 577 sequences # 1

consensusID : consensus_5719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 797
fasta sequence

                              [CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATC-ACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGTTCAATAAACGAT]

[+] EMBL CD081782             [CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATC ACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGTTCAATAAACGAT]
[-] EMBL CD075513             [                         GGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTTGAAGGTCAATAACCGAT]




>consensus_5719#0
CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATCACACCTTCAGGATCA
GTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTGTTGC
AGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGGATGACCTACCACTTTTGGATTAT
AATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTCATCACTA
CAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAATAACAGG
AATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAAAGAATCTT
GACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATGCTACTTTG
AACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGGATATATTG
CTCCCATCCACATCTGCACTCAATGACAGTTTGTATTCATCAGTAATTGTTTTAAGGTCA
ATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCCAACCAATAAA
CATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAACAAAAAAGGAT
GATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAGTGCTATCTCA
TTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGATGTTAGTCTTT
GAAGTTCAATAAACGAT

consensusID : consensus_5719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [TCGTACCTAAACTGAACGTCCTAGGAAGAGCGCCACCTTAAAATACTGTGCGCATTGAGTCAAAATAAATGTCAGTTGATTATGCATCTAAGCTGTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCTCGATGATGATTCTCAATTAGATTTGAAACTCACTGAGCTTGCTAATTTGGTACGTCAATCCACCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGGTATACCGGACTTTCGAGGTCCTCGTGGTGTCTGGACGTTGGAAAAAGTTGGAAAAAAATCTAAACTTTCCGTACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGAGCTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAACTCAAAATATCGATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCATGGTGATATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAA]

[+] EMBL CD185300             [TCGTACCTAAACTGAACGTCCTAGGAAGAGCGCCACCTTAAAATACTGTGCGCATTGAGTCAAAATAAATGTCAGTTGATTATGCATCTAAGCTGTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCTCGATGATGATTCTCAATTAGATTTGAAACTCACTGAGCTTGCTAATTTGGTACGTCAATCCACCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGGTATACCGGACTTTCGAGGTCCTCGTGGTGTCTGGACGTTGGAAAAAGTTGGAAAAAAATCTAAACTTTCCGTACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGAGCTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAACTCAAAATATCGATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCATGGTGATATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAA]




>consensus_5719#1
TCGTACCTAAACTGAACGTCCTAGGAAGAGCGCCACCTTAAAATACTGTGCGCATTGAGT
CAAAATAAATGTCAGTTGATTATGCATCTAAGCTGTCCTACTATCCCAACAAAGGAGTTT
GTGGTTTACCTGAAGTTCTCGATGATGATTCTCAATTAGATTTGAAACTCACTGAGCTTG
CTAATTTGGTACGTCAATCCACCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCAT
CAGTGGGTATACCGGACTTTCGAGGTCCTCGTGGTGTCTGGACGTTGGAAAAAGTTGGAA
AAAAATCTAAACTTTCCGTACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGAGCTC
TTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAACTCAAAATATCGATGGGT
TGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCATGGTGATATGTTTC
TTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAGGATCAGTGG
GTTTACGTCAATCATCAGTTGTATGCACCTATTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5719#0      CGGGCCTTTAATTCGGCACGCAGGTGGAACCTTATACGCTCGATCACACCTTC-AGGATC 59
consensus_5719#1      -------------------------------TCGTAC-CTAAACTGAACGTCCTAGGAAG 28
                                                     *  *** **  *    ** * * ****  

consensus_5719#0      AGTGGGTTTACGTCAATCATCAGTTGTATGCACCTATTTGAAACATAATAAACGGTG-TT 118
consensus_5719#1      AGCG---CCACCTTAA--AATA-CTGTGCGCATTGAGTCAAAATA-AATGTCAGTTGATT 81
                      ** *     ** * **  *  *  ***  ***   * *  *** * ***    * ** **

consensus_5719#0      GCAGAGGAAAGCTTCGTGATACTATTCTTGACTGGGAGG--ATGACCTACC---ACTTTT 173
consensus_5719#1      ATGCATCTAAGCT--GTCCTACTATCCCAACAAAGGAGTTTGTGGTTTACCTGAAGTTCT 139
                          *   *****  **  ****** *       ****    **   ****   * ** *

consensus_5719#0      GGATTATAATCTTGCAGTCGAACATTCAAAAAAAGCAGATCTTCATATATGTATTGGCTC 233
consensus_5719#1      CGATGATGATTCT-CAATTAGA--TTTGAAACTCACTGAGCTTGCTA-AT---TTGGTAC 192
                       *** ** **  * ** *   *  **  ***    * ** ***  ** **   ****  *

consensus_5719#0      ATCACTACAAATGTTCCCTGCTGCCGGTTTTCCTCTAACAAACGTTTGTAAGACTGTCAA 293
consensus_5719#1      GTCAATCCA-----CCTACATAGTTGTGCATACTGGAGCTGGTATTAGCGCATCAGTGGG 247
                       *** * **      *      *  *    * **  * *     ** *     * **   

consensus_5719#0      TA-ACAGGAATACCAACAATCGACCTTTCATTCGAAATGGTTATAAAATTGAGAGTTCAA 352
consensus_5719#1      TATACCGGACTTTCGA-GGTCCTCGTGGTGTCTGGA-CGTTGGAAAAAGTTGGA----AA 301
                      ** ** *** *  * *   **  * *    *  * *  * *   **** *  **    **

consensus_5719#0      AGAATCTTGACTCAAAACTAGTAATTATTAACCTACAGCCAACAAAAATGGATAAATATG 412
consensus_5719#1      AAAATCTAAACTTTCCG-TACCTTTTGAAAAAGTGGTTCCATCACTAACACATCGA---G 357
                      * *****  ***      **    **   **  *    *** **  **   **  *   *

consensus_5719#0      CTACTTTGAACATAAATGCACCCGCTGACTTCGTAATGAAAGTATTATGTGAAAAATTGG 472
consensus_5719#1      CTCTTGTTGAATTGGAAAAACACGATGTTGTCAAATTCTTGGTAAC---TCAAAATATCG 414
                      **  * *  *  *  *   ** ** **   **  * *    ***     * ****  * *

consensus_5719#0      ATATATTGCTCCCATCCACATCTGCACTCAATGACAGTTTG--TATTCATCAGTAATTGT 530
consensus_5719#1      ATGGGTTGCACTTAAGATCTGGCTTTCCAAGAGACCGTTTGGCTATTCTTCA-TGGTGAT 473
                      **   **** *  *    *       *  *  *** *****  ***** *** *  *  *

consensus_5719#0      TTTAAGGTCAATACACTCCAATTTAAAAGAACCATGTCCATGGCGTATCCTCCCTCATCC 590
consensus_5719#1      ATGTTTCTTAATACATGTAGTGCTTGTGGAACCTTATACGCTCGATCAACACCTTCAG-- 531
                       *     * ******        *    ***** * * *      *   * ** ***   

consensus_5719#0      AACCAATAAACATACACTTCTCATTGTTCAAACTAGTAGCCAGTGCATGGAACTAAAAAC 650
consensus_5719#1      GATCAGTGGGTTTACGTCAATCATCAGTTGTAT--GCACCTATTTGAA------------ 577
                       * ** *     ***     ****   *   *   * * * * *  *             

consensus_5719#0      AAAAAAGGATGATGGAACGAGCTGTCTGCAGTCTGAAAACGTTCCAAACGGGTCATGTAG 710
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      TGCTATCTCATTTCAATTATCTAAATTAGAATCAACGTTTTGATCACTTTTTCTCCTGAT 770
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GTTAGTCTTTGAAGTTCAATAAACGAT 797
consensus_5719#1      ---------------------------