cluster # 577

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Schistosoma mansoni
cluster # 577 cluster # 577 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_577#0 length = 715 sequences # 1

consensus_577#1 length = 405 sequences # 1

consensusID : consensus_577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence

                              [GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATACATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGACCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAGTTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATCAAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCATACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAAGATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCATAGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAATAAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGATCACAATGTATAAGGTGATCATTGTTTGATATGGAAAACAAAATGTCTCGTAAATTGACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGATTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA]

[+] EMBL CD081130             [GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATACATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGACCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAGTTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATCAAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCATACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAAGATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCATAGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAATAAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGATCACAATGTATAAGGTGATCATTGTTTGATATGGAAAACAAAATGTCTCGTAAATTGACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGATTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA]




>consensus_577#0
GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATAC
ATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGA
CCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAG
TTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATC
AAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCAT
ACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAA
GATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCAT
AGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAAT
AAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGA
TCACAATGTATAAGGTGATCATTGTTTGATATGGAAAACAAAATGTCTCGTAAATTGACT
GTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGATTCG
ATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA

consensusID : consensus_577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [AGGTGATCCTTGTTTGATATGGAAAACAAAATGTTTTGTAAATTGACTGTTAGATTATAAAATGGAAGTGTTTAACTGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACATTTACCTTTTTTTTGAAAGACAATAAGTTATAATGTGTAGATTACATCCTGCGAAATCGCTTACTTTTTTATCCCGGTTATTTTAGCTTTCCCTTTGACTTAAGCATCGGAAAAGGAAAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATAATTTAAATAATTGTAATTACGGTCCTTTAAATACACGTTTTTATATCCTACCTTTTGTTTAACTTCCTACATGTTTCCATAAGCCACGACGTTAATATAAACCCATG]

[-] EMBL CD074953             [AGGTGATCCTTGTTTGATATGGAAAACAAAATGTTTTGTAAATTGACTGTTAGATTATAAAATGGAAGTGTTTAACTGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACATTTACCTTTTTTTTGAAAGACAATAAGTTATAATGTGTAGATTACATCCTGCGAAATCGCTTACTTTTTTATCCCGGTTATTTTAGCTTTCCCTTTGACTTAAGCATCGGAAAAGGAAAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATAATTTAAATAATTGTAATTACGGTCCTTTAAATACACGTTTTTATATCCTACCTTTTGTTTAACTTCCTACATGTTTCCATAAGCCACGACGTTAATATAAACCCATG]




>consensus_577#1
AGGTGATCCTTGTTTGATATGGAAAACAAAATGTTTTGTAAATTGACTGTTAGATTATAA
AATGGAAGTGTTTAACTGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATG
AACCAGGGGAACATTTACCTTTTTTTTGAAAGACAATAAGTTATAATGTGTAGATTACAT
CCTGCGAAATCGCTTACTTTTTTATCCCGGTTATTTTAGCTTTCCCTTTGACTTAAGCAT
CGGAAAAGGAAAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATAAT
TTAAATAATTGTAATTACGGTCCTTTAAATACACGTTTTTATATCCTACCTTTTGTTTAA
CTTCCTACATGTTTCCATAAGCCACGACGTTAATATAAACCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_577#0      GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATAC 60
consensus_577#1      ------------------------------------------------------------
                                                                                 

consensus_577#0      ATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGA 120
consensus_577#1      ------------------------------------------------------------
                                                                                 

consensus_577#0      CCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAG 180
consensus_577#1      ------------------------------------------------------------
                                                                                 

consensus_577#0      TTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATC 240
consensus_577#1      ------------------------------------------------------------
                                                                                 

consensus_577#0      AAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCAT 300
consensus_577#1      ----------------------------------------AGGTGATCCTTGTTTGATAT 20
                                                             ** * *** *    *   **

consensus_577#0      ACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAA 360
consensus_577#1      GGAAAACAAAATGTTTTGTAAATTGACT-GTTAGATTATAAAATGGAAGTGTTTAAC--- 76
                       **   * ** ****   *** ** **  **  *    ** * ***      ***    

consensus_577#0      GATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCAT 420
consensus_577#1      --TGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACAT 134
                       ******  * ** **   **     *   *** ** *   **** *  *  * * ***

consensus_577#0      AGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAAT 480
consensus_577#1      TTACCTTTTTTTTGAAAGAC-----AATAAGTTATAATGTGTAGATTACATCC-TGCGA- 187
                       *  *  ***   * ***      ***     ** **    *   *****   **  * 

consensus_577#0      AAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGA 540
consensus_577#1      AATCGCTTACTTTTTTATCCCGGT---TATTTTAGCTTTCCCTTTGACTTAAGCATCGGA 244
                     **  *   *  * * * * ***     ** **    **      * **  *   **  **

consensus_577#0      TCACAATGTATAAGGTGATCATTGTTTGATATGGAAAAC----AAAATGTCTCGTAAATT 596
consensus_577#1      AAAGGA------AAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATA 298
                       *  *      *   ** *   **   ****  **         ****  * * * ** 

consensus_577#0      GACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGA 656
consensus_577#1      ATTTAAATAATTGTAAT-TACGGTCCTTTAAATACACGTTTTTATATCCTACC--TTTTG 355
                        *     *** ***  *       ***** *      *** ** * * *    ***  

consensus_577#0      TTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA 715
consensus_577#1      TTTAACTTCCTACATGTTTCCATAAGCCA-CGACGTTAATAT--AAACCCATG------ 405
                     **  * **   * ***   *    *  ** * ** **  * *  ***  ***