cluster # 5785

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Schistosoma mansoni
cluster # 5785 cluster # 5785 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5785#0 length = 579 sequences # 2

consensus_5785#1 length = 293 sequences # 1

consensusID : consensus_5785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence

                              [CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTTCAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGATCAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAAGAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAGGATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG]

[+] EMBL CD077236             [CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAA                                                                                                                                                                                                                                                  ]
[+] EMBL CD074293             [                                ACAAAATTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATTGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTTGCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCAGCAACGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTTCAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGATCAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAAGAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAGGATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG]




>consensus_5785#0
CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATA
TGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTT
AACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGCTACTGTTGACAGCTTTT
GCAACTATATGAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGAGA
GATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATA
CCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTTCA
AGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGATCA
AAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAAGA
GAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAGGA
TGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG

consensusID : consensus_5785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [AAATTTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTGGCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCCAGCACGGATAAAGTCAAACTTT]

[+] EMBL CD074473             [AAATTTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTGGCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATATACCCAGCACGGATAAAGTCAAACTTT]




>consensus_5785#1
AAATTTGACTGAAAATTGAATAAATATGAAAATTAAGAGGTAAATAGAGATTCGAAGACT
TGCAGTCCTATGGGCGTTCCTGATTTAACTTTTTCGCTCACGAACGATACTTTTCTCCGA
CGTACTTGTATGGGGGCGGTGGTTTGGCTTATTATAGAGAGGGGTGATTCCCCCCAAACA
GATGACGAACCCAAACACATTTACGAGAGATATGTTATCCCCATTAAATTTTGCAGCAAG
ATACAAAGTACATACTTCCTTAAATATACCCAGCACGGATAAAGTCAAACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5785#0      CATAGTTTCTTATTTTATTATTTATCCGCCAAACAAAATTGACTGAAAATTGAATAAATA 60
consensus_5785#1      ----------------------------------AAATTTGACTGAAAATTGAATAAATA 26
                                                        *** **********************

consensus_5785#0      TGAAAATTAAGAGGTAAATAGAGATTCGAAAACTTGCAGTCCTATGGGCGTTCCTGATTT 120
consensus_5785#1      TGAAAATTAAGAGGTAAATAGAGATTCGAAGACTTGCAGTCCTATGGGCGTTCCTGATTT 86
                      ****************************** *****************************

consensus_5785#0      AACTTTTTCGCTCACAAACGATACTTTTCTCCGACGTACTTGC-TACTGTTGACAGCTTT 179
consensus_5785#1      AACTTTTTCGCTCACGAACGATACTTTTCTCCGACGTACTTGTATGGGGGCGGTGGTTTG 146
                      *************** **************************  *   *  *   * ** 

consensus_5785#0      TGCAACTATAT-GAAGAGTGATTCCACACAAACAGATGACGAAGCCAAACACATTTACGA 238
consensus_5785#1      GCTTATTATAGAGAGGGGTGATTCCCCCCAAACAGATGACGAACCCAAACACATTTACGA 206
                          * ****  ** * ******** * *************** ****************

consensus_5785#0      GAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATA 298
consensus_5785#1      GAGATATGTTATCCCCATTAAATTTTGCAGCAAGATACAAAGTACATACTTCCTTAAATA 266
                      ************************************************************

consensus_5785#0      TACCAGCACCGGATAAAGTCAAACTTGAAGCAGAACTAACAACTAGATATTCTGATATTT 358
consensus_5785#1      TACCCAGCACGGATAAAGTCAAACTTT--------------------------------- 293
                      ****     *****************                                  

consensus_5785#0      CAAGACCGAATGCTAACACAGCTCCAGTACCTAGTTGGACTAAGTCGCCTATTAACTGAT 418
consensus_5785#1      ------------------------------------------------------------
                                                                                  

consensus_5785#0      CAAAGGCAGCAGTGCGAAAAAGATTCCTCGCTGTTATGAGTTCAAAACCTTCGATGTAAA 478
consensus_5785#1      ------------------------------------------------------------
                                                                                  

consensus_5785#0      GAGAAAGGGGCAAAATAGCCAGTGCCATCCATGGTTGTGAGTGGAACATAAAATCAATAG 538
consensus_5785#1      ------------------------------------------------------------
                                                                                  

consensus_5785#0      GATGAGAAAGACCATAACATTGTCCTTGTACGAATAGCTGG 579
consensus_5785#1      -----------------------------------------