cluster # 5796

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Schistosoma mansoni
cluster # 5796 cluster # 5796 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5796#0 length = 504 sequences # 2

consensus_5796#1 length = 276 sequences # 1

consensusID : consensus_5796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 504
fasta sequence

                              [CTGTCTCCTGGTGTGAGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTT-AACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTTCTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGTCTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGCGCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATAAAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA]

[+] EMBL CD087860             [CTGTCTCCTGGTGTGAGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTT AACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTTCTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGTCTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGCGCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATAAAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA]
[+] EMBL CD087939             [                       TGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAAACTGT GGGAAGCTTTCTACAGCAT                                                                                                                                                                                                                                                 ]




>consensus_5796#0
CTGTCTCCTGGTGTGAGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGAT
ACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTT
TAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCA
CGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAAC
TGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTTCTCCGACACCAT
GGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGTCTACACTGCAAA
GCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGCGCCGAGCAAGGC
TGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATAAAGACCTCCACT
TCTCAGAGAAAGCACAGAATACAA

consensusID : consensus_5796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG]

[+] EMBL CD087922             [CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATAGCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTATAAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAAACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATCAACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG]




>consensus_5796#1
CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATA
GCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTAT
AAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAA
ACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATC
AACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5796#0      -------CTGTCTCCTGGTGT-----GAGAACAAGTGCCAGCAAACTGGAAATAAGGATA 48
consensus_5796#1      CGACGTTCTATTCATGAAGATTTGGGAGGAACAAGTGCCAGCAAACTGGAAATAAGGATA 60
                             ** *         *       ********************************

consensus_5796#0      GCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTAT 108
consensus_5796#1      GCTCACCAAGATACCGGAGAAAGGAGATTCCAGCGGCTGTGAGAACTGCAGAGATTCTAT 120
                      ************************************************************

consensus_5796#0      AAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAA 168
consensus_5796#1      AAAGAACAACTTTAAGATCAACGGATCAGATTCCGTAAGGATCGGTCATGCAAAGATCAA 180
                      ************************************************************

consensus_5796#0      ACCACAACATCACGGATCATTTTTGAACGATTGGCTGAGAGGAATTCGTCACTATAAATC 228
consensus_5796#1      ACCACAACATCACGGATCATTTTTGAACAATTGGCTGAGAGGAATTCGTCACTATAAATC 240
                      **************************** *******************************

consensus_5796#0      AACTCCCTTAACTGTGGGGAAGCTTTCTACAGCATGGATAGGAAACCTTTGTAGAACCTT 288
consensus_5796#1      AACTCCCTTAACTGTGAGGAAGCTTTCTACAGCATG------------------------ 276
                      **************** *******************                        

consensus_5796#0      CTCCGACACCATGGTATACCCTAGAATATTGTCACCAACACGCGGAATTTACATAATAGT 348
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      CTACACTGCAAAGCCGTGCATGGAGGATAGCTGACTGATGCATTTTAAGAGAACGCCGGC 408
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      GCCGAGCAAGGCTGATTACTGTCGCCCTTCGTCCTACTTTAGGTGGCCCACTGGATTATA 468
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      AAGACCTCCACTTCTCAGAGAAAGCACAGAATACAA 504
consensus_5796#1      ------------------------------------