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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence
[GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA]
[+] EMBL CD083208 [GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTN ]
[-] EMBL CD076782 [ TGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTCTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA]
consensusID : consensus_5800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG]
[+] EMBL CD084191 [AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5800#0 ------------------------------------------------------------
consensus_5800#1 AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCA 60
consensus_5800#0 ------GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGT 54
consensus_5800#1 TCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGT 120
** * * * *******************************
consensus_5800#0 TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 114
consensus_5800#1 TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 180
************************************************************
consensus_5800#0 TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 174
consensus_5800#1 TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 240
************************************************************
consensus_5800#0 TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 234
consensus_5800#1 TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 300
************************************************************
consensus_5800#0 ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 294
consensus_5800#1 ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 360
************************************************************
consensus_5800#0 TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 354
consensus_5800#1 TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 420
************************************************************
consensus_5800#0 AGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAAT 414
consensus_5800#1 AGAAATGCTGCTATTAACAACAGATTTG-------------------------------- 448
****************************
consensus_5800#0 TCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAA 474
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGT 534
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 ATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAAT 594
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 GTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAAT 654
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAAT 714
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGT 774
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATG 834
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAG 894
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 CTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACA 954
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATA 1014
consensus_5800#1 ------------------------------------------------------------
consensus_5800#0 TGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA 1060
consensus_5800#1 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||