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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence
[CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGTATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATATGATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCTCGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTAACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAGAAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACNTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTNTTTTTNTACAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTCTTCAATTCTGTTTGATTGACGTCATGCTATTCATGTTGTCTAGTANTTATAACAGTTTTTCTATGAACATGACTGATAAATATGATATCTTATGCTACTAGATCATTGATATTAGCACCGTGACATACTTTGTCAGTTTTAAGCANTGGTCAGAATTGGTACAGGCT]
[+] EMBL CD080082 [CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGTATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATATGATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCTCGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTAACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAGAAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACNTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTNTTTTTNTACAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTCTTCAATTCTGTTTGATTGACGTCATGCTATTCATGTTGTCTAGTANTTATAACAGTTTTTCTATGAACATGACTGATAAATATGATATCTTATGCTACTAGATCATTGATATTAGCACCGTGACATACTTTGTCAGTTTTAAGCANTGGTCAGAATTGGTACAGGCT]
consensusID : consensus_5821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[ATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTATTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATCCATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATGGGTNTCCCTATTGGTAACTAGATCCATGGATTTTTAGCAACCGATGGCATCACTNGGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGGNANCANGTT]
[+] EMBL SM7661 [ATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTATTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATCCATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATGGGTNTCCCTATTGGTAACTAGATCCATGGATTTTTAGCAACCGATGGCATCACTNGGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGGNANCANGTT]
consensusID : consensus_5821#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTTCTCAATTCTGTTTGATTGACGTCAATGCTATTCATGTTGTCTAAGTAATTATAACAGTTTTTCCTATGAACATGGACTGATAAATAATTGATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAACCGATGGACATCACTTTTGTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA]
[-] EMBL CD076770 [GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTTCTCAATTCTGTTTGATTGACGTCAATGCTATTCATGTTGTCTAAGTAATTATAACAGTTTTTCCTATGAACATGGACTGATAAATAATTGATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAACCGATGGACATCACTTTTGTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5821#1 ------------------------------------------------------------
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGT 60
consensus_5821#1 ------------------------------------------------------------
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 ATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATAT 120
consensus_5821#1 ------------------------------------------------------------
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 GATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCT 180
consensus_5821#1 ------------------------------------------------------------
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 CGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTA 240
consensus_5821#1 ------------------------------------------------------------
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 ACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAG 300
consensus_5821#1 -------------------------------------ATGATAATGATGATGATGACAAG 23
consensus_5821#2 ------------------------------------------------------------
consensus_5821#0 AAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAG 360
consensus_5821#1 GAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 83
consensus_5821#2 -------GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 53
consensus_5821#0 GAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 420
*****************************************************
consensus_5821#1 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 143
consensus_5821#2 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 113
consensus_5821#0 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 480
************************************************************
consensus_5821#1 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGA 203
consensus_5821#2 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGA 173
consensus_5821#0 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGA 540
**************************************************** *******
consensus_5821#1 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACT 263
consensus_5821#2 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACT 233
consensus_5821#0 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACN 600
***********************************************************
consensus_5821#1 T-ATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTT 322
consensus_5821#2 T-ATTCATTACGGGAGTTG-AAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTT 291
consensus_5821#0 TTATTCATTACGGGAGTTG-AAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTT 659
* ***************** ********************* ******************
consensus_5821#1 AAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTA 382
consensus_5821#2 AAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAA-GCTGTTGGTTTTTAATTTA 350
consensus_5821#0 AAACATCTTCCTTTCGACTGATAGATTNTTTTTN-TACAAAGCTGTTGGTTTTTAATTTA 718
*************************** ***** * ** ***** *** *********
consensus_5821#1 TTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATC 442
consensus_5821#2 TTTTTAGT--GTAACTGTATTTTCT-CAATTCTGTTTG--ATTGACGTC--AATGCTATT 403
consensus_5821#0 TTTTTAGT--GTAACTGTATTTCTT-CAATTCTGTTTG--ATTGACGTC---ATGCTATT 770
******* ************ * *** **** ** ****** *******
consensus_5821#1 CATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATG 502
consensus_5821#2 CATGTTGTCT-AAGTAATTATA-ACAGTTTTTCCTATGAACATGGACT-GATAAATAATT 460
consensus_5821#0 CATGTTGTCT--AGTANTTATA-ACAGTTTTTC-TATGAACATG-ACT-GATAAATA--T 822
***** * ** *** ***** * ***** * ********** *** ********
consensus_5821#1 GGTNTCCCTATTGGTAACTAGATCCAT-GGATTTTTAGCAAC-CGATGG-CATCACTN-- 557
consensus_5821#2 GATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAAC-CGATGGACATCACTTTT 519
consensus_5821#0 GATATCTTA--TGCTA-CTAGATCATT--GATATT-AGCACCGTGACATACTTTGTCAG- 875
* * ** ** ** ****** * ** ** **** * ** * *
consensus_5821#1 GGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGG--NANCANGTT------- 602
consensus_5821#2 GTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA 573
consensus_5821#0 TTTTAAGCANTGGTCAGAATTGGTACAGGCT----------------------- 906
* * * * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||