cluster # 5822

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Schistosoma mansoni
cluster # 5822 cluster # 5822 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5822#0 length = 329 sequences # 2

consensus_5822#1 length = 216 sequences # 1

consensusID : consensus_5822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 329
fasta sequence

                              [TTACTCGTGCCAATTGGAGCCCTTTCGCCGGCAGAGTTGTTCGTGGTCAAGTTCGTCGGGTCATGCTCCGAGGTCATCTAGCATTTGTCGATGGACGTGTCTTGGTAGAGCCTGGTTTCGGTAAAGATGTGTCGCCAGACATATCCTTGTCCAAGAATTCTTACGACCCACTAACAATTGACACTTCTTTGAAACATATCCCTGTCTCAGCTGGTTCTCCCACTCTAAGAAACCGGTATAGTTCAACTAATGAACGTGTTCAGTCTCAAGATGAACCTGGTACACCGATCCCAGCTAACACTCAAAGTGATGAGGGACCTCGTAGTCCA]

[+] EMBL CD128187             [TTACTCGTGCCAATTGGAGCCCTTTCGCCGGCAGAGTTGTTCGTGGTCAAGTTCGTCGGGTCATGCTCCGAGGTCATCTAGCATTTGTCGATGGACGTGTCTTGGTAGAGCCTGGTTTCGGTAAAGATGTGTCGCCAGACATATCCTTGTCCAAGAATTCTTACGACCCACTAACAATTGACACTTCTTTGAAACATATCCCTGTCTCAGCTGGTTCTCCCACTCTAAGAAACCGGTATAGTTCAACTAATGAACGTGTTCAGTCTCAAGATGAACCTGGTACACCGATCCCAGCTAACACTCAAAGTGATGAGGGACCTCGTAGTCCA]
[+] EMBL CD127749             [TTACTCGTGCTAATTGGAGCCCTTTCGCCGGCAGAGTTGTTCGTGGTCAAGTTCGTCGGGTCATGCTCCGAGGTCATCTAGCATTTGTCGATGGACGTGTCTTGGTAGAGCCTGGTTTCGGTAAAGATGTGTCGTCAGACATATCCTTGTCCAAGAATTCTTACGACCCACTAACAATTGACACTTCTTTGAAACATATCCCTGTCTCAGCTGGTTCTCCCACTCTAAGAAACCGGTATAGTTCAACTAATGAACGTGTTCAGTCTCAAGATGAACCTGGTACACCGATCCCAGCTAACACTCAAAGTGATGAGGGACCTCGTAGTCCA]




>consensus_5822#0
TTACTCGTGCCAATTGGAGCCCTTTCGCCGGCAGAGTTGTTCGTGGTCAAGTTCGTCGGG
TCATGCTCCGAGGTCATCTAGCATTTGTCGATGGACGTGTCTTGGTAGAGCCTGGTTTCG
GTAAAGATGTGTCGCCAGACATATCCTTGTCCAAGAATTCTTACGACCCACTAACAATTG
ACACTTCTTTGAAACATATCCCTGTCTCAGCTGGTTCTCCCACTCTAAGAAACCGGTATA
GTTCAACTAATGAACGTGTTCAGTCTCAAGATGAACCTGGTACACCGATCCCAGCTAACA
CTCAAAGTGATGAGGGACCTCGTAGTCCA

consensusID : consensus_5822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [GTTTCAAAGAAGTGTCAATTGTTAGTGGGTCGTAAGAATTCTTGGACAAGGATATGTCTGACGACACATCTTTACCGAAACCAGGCTCTACCAAGACTGAAATAAGATAGTGATAAAGGTTGCAAGAAAAAGTATTTATCCACTGGAAACGTACATAAAAGATAACGGTGATATATATGTGATTTCTAAGAAAAGTAGTTCAATTTAATGACTATT]

[+] EMBL CD149146             [GTTTCAAAGAAGTGTCAATTGTTAGTGGGTCGTAAGAATTCTTGGACAAGGATATGTCTGACGACACATCTTTACCGAAACCAGGCTCTACCAAGACTGAAATAAGATAGTGATAAAGGTTGCAAGAAAAAGTATTTATCCACTGGAAACGTACATAAAAGATAACGGTGATATATATGTGATTTCTAAGAAAAGTAGTTCAATTTAATGACTATT]




>consensus_5822#1
GTTTCAAAGAAGTGTCAATTGTTAGTGGGTCGTAAGAATTCTTGGACAAGGATATGTCTG
ACGACACATCTTTACCGAAACCAGGCTCTACCAAGACTGAAATAAGATAGTGATAAAGGT
TGCAAGAAAAAGTATTTATCCACTGGAAACGTACATAAAAGATAACGGTGATATATATGT
GATTTCTAAGAAAAGTAGTTCAATTTAATGACTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5822#0      TTACTCGTGCCAATTGGAGCCCTTTCGCCGGCAGAGTTGTTCGTGGTCAAGTTCGTCGGG 60
consensus_5822#1      ------------------------------------------------------------
                                                                                  

consensus_5822#0      TCATGCTCCGAGGTCATCTAGCATTTGTCGATGGACGTGTCTTGGTAGAGCCTGGTTTCG 120
consensus_5822#1      ----GTTTCAAAG--AAGTGTCAATTGTTAGTGGG-------TCGTAAGAATT--CTTGG 45
                          * * * * *  *  *  ** ****   ***        * ***     *   ** *

consensus_5822#0      GTAAAGATGTGTCGCCAGACATATCCTTGTCCAAGAATTCTTACGACCCACTAACAATTG 180
consensus_5822#1      ACAAGGATATGTCTGACGACACATCTTTACCGAAA-----CCAGGCTCTACCAA-GACTG 99
                        ** *** ****    **** *** **  * **        * *  * ** **  * **

consensus_5822#0      ACACTTCTTTGAAACATATCCCTGTCTCAGCTGGTTCTCCCACTCTAAGAAACCG-GTAT 239
consensus_5822#1      AAATAAGATAGTGATAAAGGT-TGCAAGAAAAAGTATTTATCCACTGGAAACGTACATAA 158
                      * *     * *  * * *    **    *    **  *    * **   **      ** 

consensus_5822#0      AGTTCAACTAATGAACGTGTTCAGTCTCAAGATGAACCTGGTACACCGATCCCAGCTAAC 299
consensus_5822#1      AAGATAACGGTGATATATATGTGATTTCTAAGAAAA----GTAGTTCAATTT-AATGACT 213
                      *    ***      *  * *    * ** *    **    ***   * **   *   *  

consensus_5822#0      ACTCAAAGTGATGAGGGACCTCGTAGTCCA 329
consensus_5822#1      ATT--------------------------- 216
                      * *