cluster # 584

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Schistosoma mansoni
cluster # 584 cluster # 584 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_584#0 length = 561 sequences # 1

consensus_584#1 length = 148 sequences # 1

consensusID : consensus_584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCGGATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAGTAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAATGTTTGGTTGATTTTGAGTGTG]

[+] EMBL CD062145             [ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCGGATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAGTAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAATGTTTGGTTGATTTTGAGTGTG]




>consensus_584#0
ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCG
GATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGA
GTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAG
TTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTG
TGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTC
GTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGA
CTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCG
TGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAG
TAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAAT
GTTTGGTTGATTTTGAGTGTG

consensusID : consensus_584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [CGACCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGGTAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGTTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGCGGGTGG]

[+] EMBL CD130636             [CGACCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGGTAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGTTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGCGGGTGG]




>consensus_584#1
CGACCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGT
AGGTAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGTTGATCTAGCATAA
GTTATGTAGTGAATGTGTTTGCGGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_584#0      ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCG 60
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      GATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGA 120
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      GTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAG 180
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      TTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTG 240
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      TGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTC 300
consensus_584#1      ------------------------------------------------------------
                                                                                 

consensus_584#0      GTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGA 360
consensus_584#1      ---------------------------------------------------------CGA 3
                                                                               **

consensus_584#0      CTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCG 420
consensus_584#1      CCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGG 63
                     *   * ****     * **  * * ***  * ** *  *  *    *  * ** * *  *

consensus_584#0      TGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAG 480
consensus_584#1      TAGATGAGTG-------TATAGTGTGTGTGT-GTGTGTTTGT-GCGAGCGTGTTGATC-- 112
                     *   ******        ***** **    * ** ******* * *** *  *** *   

consensus_584#0      TAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAAT 540
consensus_584#1      TAGCATAAGTTATGTAGTGAATGTGTT----TGCGGGTGG-------------------- 148
                     ***  **   *   ** *  * *****    **** * *                     

consensus_584#0      GTTTGGTTGATTTTGAGTGTG 561
consensus_584#1      ---------------------