cluster # 5840

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Schistosoma mansoni
cluster # 5840 cluster # 5840 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5840#0 length = 599 sequences # 2

consensus_5840#1 length = 540 sequences # 1

consensusID : consensus_5840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTACATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT]

[+] EMBL CD095690             [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTACATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT]
[+] EMBL CD095627             [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTAAATCTTTACATTTTGTACGATTAACCATTTTACGCAAACCC       ]




>consensus_5840#0
CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGT
TCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCA
AAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGT
ATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGG
TTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTAT
ATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATG
TACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAA
TGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAA
TATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAAT
ATTTTGATGTANATCTTTACATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT

consensusID : consensus_5840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAAATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCTTTTGTGCATCTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACGAATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCTCTTCACCACCAGTATAACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTGCCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAACATGAAAGTGCCCATCCAAATGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAACGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACACCCCATG]

[-] EMBL CD194795             [TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAAATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCTTTTGTGCATCTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACGAATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCTCTTCACCACCAGTATAACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTGCCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAACATGAAAGTGCCCATCCAAATGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAACGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACACCCCATG]




>consensus_5840#1
TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAA
ATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCT
TTTGTGCATCTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACGAA
TATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCTCTTCACCACCAGTATAAC
CGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTGCCA
TAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAACATGAAAGTGCCCATC
CAAATGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAACGAATAC
CAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCAACAATTT
CAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACACCCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5840#0      ------------------------------------------------------------
consensus_5840#1      TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAA 60
                                                                                  

consensus_5840#0      -------------------------CGACAAAATGTCAGGTTTGATGCATATGGAGACAG 35
consensus_5840#1      ATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCT 120
                                                    *    * ** **  **   **         

consensus_5840#0      AGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAG 95
consensus_5840#1      TTTGTGCAT--CTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACG 178
                         *  **    *     *   ** **   *    ** *** ****    *  *  ** *

consensus_5840#0      ATTATTGA-------AGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAA- 147
consensus_5840#1      AATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCT-CTTCACCACCAGTAT 237
                      * ****         *   *  *  **  * * **  *** *    **   *   ** * 

consensus_5840#0      -ATTAAAAAGCTAGCT---AACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTT 203
consensus_5840#1      AACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTG 297
                       *    **  * ***    ****  **  *    * *   **     * * *     ** 

consensus_5840#0      TTA-AGGC--TGAACGTAAAACTATAATTTGACCAG-GTGGTTGAATCCATGGTTCACCA 259
consensus_5840#1      CCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAAC-ATGAA--AGTG 354
                        * ****  ** * *  *  *   *  *******  **  *  ** * ***    *   

consensus_5840#0      TCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAA 319
consensus_5840#1      CCCATCCAAA-TGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAA 413
                       * *    ** ************************* ****************** ****

consensus_5840#0      CGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCA 379
consensus_5840#1      CGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCA 473
                      ************ ****************************** ****************

consensus_5840#0      ACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACA 439
consensus_5840#1      ACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACA 533
                      ************************************************* **********

consensus_5840#0      CCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAAT 499
consensus_5840#1      CCCCATG----------------------------------------------------- 540
                      *******                                                     

consensus_5840#0      GGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTA 559
consensus_5840#1      ------------------------------------------------------------
                                                                                  

consensus_5840#0      CATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT 599
consensus_5840#1      ----------------------------------------