cluster # 5874

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Schistosoma mansoni
cluster # 5874 cluster # 5874 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5874#0 length = 946 sequences # 2

consensus_5874#1 length = 283 sequences # 1

consensusID : consensus_5874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 946
fasta sequence

                              [AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGAGATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTCACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACACTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGAAGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACAATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCTGTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGC-ACTGTCAGTGAAGTAAGCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTGAAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTATAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC]

[+] EMBL CD076642             [AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGAGATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTCACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACACTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGAAGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACAATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCTGTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGC ACTGTCAGTGAAGTAAGC                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD083069             [                                                                                                                                                                                                                                                                                                                                                                                                                              CTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAG AGCAACTGTCAGTGAAGTAAGCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTGAAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTATAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC]




>consensus_5874#0
AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGA
GATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTC
ACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACA
CTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGA
AGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACA
ATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCT
GTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGA
TAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTA
TTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATG
CCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGCACTGTCAGTGAAGTAA
GCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTG
AAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTA
TAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATT
GATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAAT
GGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGT
TGTAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC

consensusID : consensus_5874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [TTTATTCTGTCAATAGATGGTGAATGGAACTTCATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCTATTGATAATCCTCGTGCCGAATTCTTGGCCG]

[-] EMBL CD077557             [TTTATTCTGTCAATAGATGGTGAATGGAACTTCATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCTATTGATAATCCTCGTGCCGAATTCTTGGCCG]




>consensus_5874#1
TTTATTCTGTCAATAGATGGTGAATGGAACTTCATGTATTGGATTACCGTCAAACCAAGT
GTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATAT
CTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTG
TTGAGCATAAGTTGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCG
TTTTGTTCATCTATTGATAATCCTCGTGCCGAATTCTTGGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5874#0      AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGA 60
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      GATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTC 120
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      ACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACA 180
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      CTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGA 240
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACA 300
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      ATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCT 360
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      GTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGA 420
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      TAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTA 480
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      TTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATG 540
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      CCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGCACTGTCAGTGAAGTAA 600
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      GCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTG 660
consensus_5874#1      ------------------------------------------------------------
                                                                                  

consensus_5874#0      AAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTA 720
consensus_5874#1      -----------------------------------------TTTATTCTGTCAATAGATG 19
                                                                  *   * **** ** * 

consensus_5874#0      TAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATT 780
consensus_5874#1      -GTGAATGGAACTTC------ATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATT 72
                         ***   *****        * **     *   *************************

consensus_5874#0      GATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAAT 840
consensus_5874#1      GATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAAT 132
                      ************************************************************

consensus_5874#0      GGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGT 900
consensus_5874#1      GGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGT 192
                      ************************************************************

consensus_5874#0      TGT-AAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC------------- 946
consensus_5874#1      TGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCT 252
                      *** *******************************************             

consensus_5874#0      -------------------------------
consensus_5874#1      ATTGATAATCCTCGTGCCGAATTCTTGGCCG 283