cluster # 5906

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Schistosoma mansoni
cluster # 5906 cluster # 5906 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5906#0 length = 486 sequences # 2

consensus_5906#1 length = 83 sequences # 1

consensusID : consensus_5906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence

                              [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGC]

[+] EMBL CD065001             [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGC]
[+] EMBL CD065025             [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTAGTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAACATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGCGAAAACAAGTCAG           ]




>consensus_5906#0
TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGA
ACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAAT
TGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTG
TTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACA
TACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAA
GAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAA
AATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGA
AACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGA
AAATGC

consensusID : consensus_5906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 83
fasta sequence

                              [TTTAAAAAATGATATAAAGATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAAAATGG]

[+] EMBL CD183026             [TTTAAAAAATGATATAAAGATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAAAATGG]




>consensus_5906#1
TTTAAAAAATGATATAAAGATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAA
AGATTTAGAAAACCAAAAAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5906#0      TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGA 60
consensus_5906#1      ------------------------------------------------------------
                                                                                  

consensus_5906#0      ACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAAT 120
consensus_5906#1      ------------------------------------------------------------
                                                                                  

consensus_5906#0      TGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTG 180
consensus_5906#1      ------------------------------------------------------------
                                                                                  

consensus_5906#0      TTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACA 240
consensus_5906#1      ------------------------------------------------------------
                                                                                  

consensus_5906#0      TACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAA 300
consensus_5906#1      ------------------------------------------TTTAAAAAATGATATAAA 18
                                                                ******************

consensus_5906#0      GAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAA 360
consensus_5906#1      GATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAA 78
                      ** ********************* **** ******* ******* ******** *****

consensus_5906#0      AATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGA 420
consensus_5906#1      AATGG------------------------------------------------------- 83
                      *****                                                       

consensus_5906#0      AACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGA 480
consensus_5906#1      ------------------------------------------------------------
                                                                                  

consensus_5906#0      AAATGC 486
consensus_5906#1      ------