cluster # 5910

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Schistosoma mansoni
cluster # 5910 cluster # 5910 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5910#0 length = 355 sequences # 1

consensus_5910#1 length = 285 sequences # 1
consensus_5910#2 length = 199 sequences # 1

consensusID : consensus_5910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATAAGGTTGGTCTGGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAAGCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA]

[+] EMBL CD171352             [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATAAGGTTGGTCTGGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAAGCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA]




>consensus_5910#0
TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATA
CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG
ACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGA
GAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATAAGGTTGGTCTGGAA
ACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAAGCTG
ATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA

consensusID : consensus_5910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [CTGTGCCTCAGCCTTGTAAAAGCCCAAATATTCTTCATATTCCTTATAAATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTGAAATGCTTCTTTGTAAATCTGGAACCTGAGGTCTCTGTCATTTGACCGTATATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGACGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACACATGCATTTGACTTAGC]

[+] EMBL CD189955             [CTGTGCCTCAGCCTTGTAAAAGCCCAAATATTCTTCATATTCCTTATAAATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTGAAATGCTTCTTTGTAAATCTGGAACCTGAGGTCTCTGTCATTTGACCGTATATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGACGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACACATGCATTTGACTTAGC]




>consensus_5910#1
CTGTGCCTCAGCCTTGTAAAAGCCCAAATATTCTTCATATTCCTTATAAATGTCTGAAAG
AAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTGAAATGCTTCTTTGTAAATCTG
GAACCTGAGGTCTCTGTCATTTGACCGTATATTTTTTAATCCATTACATATCTTCTTTTC
GAGTATATCAAGAAATTTCGGTTTGGGGACGATATTAGGGATTTTTGTTTCAACTTCTGT
CAACGAAACTAATCTATTATTGACAACACATGCATTTGACTTAGC

consensusID : consensus_5910#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAAAGGTTGGT]

[+] EMBL CD171221             [TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATACCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAGACCAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAAAGGTTGGT]




>consensus_5910#2
TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATA
CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG
ACCAGAACTCAATAGTTTGAAACGAGAAATTATAAGACTGAGAGAATTGGTTTCACAATT
AAAGGAGGAAAAGGTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5910#0      TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAAGCTTAGACCAGTCAAGGAATA 60
consensus_5910#2      TGAAGAATATTTGGGCTTTTACAAGGCTGAGGCACAGAGGCTTAGACCAGTCAAGGAATA 60
consensus_5910#1      ------------------CTGTGCCTCAGCCTTGTAAAAGCCCAAAT-ATTCTTCATATT 41
                                         *      * *      * * **  * *  * **     ** 

consensus_5910#0      CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG 120
consensus_5910#2      CCTCTGGACCATTTCTCAAGAATGCGATGAACGTATATTAAAATTGCAAAAAAGGGAAAG 120
consensus_5910#1      CCTTATAA--ATGTCTGAAAGAAAAGTTCTATATGTCTTAAACTCATGGATAAATGACTG 99
                      ***    *  ** *** **  *   * *  *  * * ***** *     * **  **  *

consensus_5910#0      ACCAGGTAATCATTTATATTTTAGTCCAGCAACACACAAGAACTCAATAGTTTGAAACGA 180
consensus_5910#2      ACCAG-----------------------------------AACTCAATAGTTTGAAACGA 145
consensus_5910#1      AAATGCTTCTTTGTAAATCTGGA----------ACCTGAGGTCTCTGTCATTTGACCGTA 149
                      *   *                                     ***  *  *****    *

consensus_5910#0      GAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGATA----AGGTTGGTCT 236
consensus_5910#2      GAAATTATAAGACTGAGAGAATTGGTTTCACAATTAAAGGAGGAAA----AGGTTGGT-- 199
consensus_5910#1      TATTTTTTAATCCATTACATATCTTCTTTTCGAGTATATCAAGAAATTTCGGTTTGGGGA 209
                       *  ** ***  *       **    **  * * ** *  * ** *     * ****   

consensus_5910#0      GGAAACTCAGAACAATTAACTCAATCAATTAAAGAAGAACATGATAAATTTAGAAATGAA 296
consensus_5910#2      ------------------------------------------------------------
consensus_5910#1      CGATATTAGGGATTTTTGTTTCAACTTCTGTCAACGAAACTAATCTATTATTGACAACAC 269
                                                                                  

consensus_5910#0      GCTGATGCAAAACGGCTGCTAATATCAGAAAATAATGCAATGAGAATGCAGTTTGATGA 355
consensus_5910#2      -----------------------------------------------------------
consensus_5910#1      ATGCATTTGACTTAGC------------------------------------------- 285