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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC-AGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG]
[+] EMBL CD094659 [ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC AGTTGAGCGGTATC ]
[-] EMBL CD127570 [ GAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCTTCAATAATTTTAGGAGACAAATCCACCAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTC AACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG]
consensusID : consensus_5931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT]
[-] EMBL CD153697 [AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5931#0 ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACA 60
consensus_5931#1 ------------------------------------------------------------
consensus_5931#0 CAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATC 120
consensus_5931#1 ------------------------------------------------------------
consensus_5931#0 CATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAA 180
consensus_5931#1 ------------------------------------------------------------
consensus_5931#0 GCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCA 240
consensus_5931#1 ------------------------------------------------------------
consensus_5931#0 AGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGG 300
consensus_5931#1 ---------------------AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGG 39
**************************** **********
consensus_5931#0 TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 360
consensus_5931#1 TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 99
************************************************************
consensus_5931#0 TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGT 420
consensus_5931#1 TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGT 159
*************************************************** ** *****
consensus_5931#0 TTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 480
consensus_5931#1 TTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 219
*************** ********************************************
consensus_5931#0 TCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGCAGTTGA 540
consensus_5931#1 TCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGA 279
*********************************** ************ ******
consensus_5931#0 GCGGTATCAAAATAGGATTGGT-ACCTACTATTTGCACATNCGTTGGG------------ 587
consensus_5931#1 GCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACA 339
********************** * * ** * * * * *
consensus_5931#0 ------------------------------------------------------------
consensus_5931#1 TATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGG 399
consensus_5931#0 ------------------------------------------------------------
consensus_5931#1 ATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCC 459
consensus_5931#0 ------------------------------------------------------------
consensus_5931#1 CATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAA 519
consensus_5931#0 ----
consensus_5931#1 GTAT 523
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||