cluster # 5962

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Schistosoma mansoni
cluster # 5962 cluster # 5962 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5962#0 length = 281 sequences # 1

consensus_5962#1 length = 227 sequences # 2

consensusID : consensus_5962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CATACATATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACACGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCTAATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTAAATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG]

[+] EMBL CD170258             [CATACATATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACACGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCTAATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTAAATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG]




>consensus_5962#0
CATACATATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGC
CAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACACGAATACATATATC
ATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCTAATTT
CATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTAAATAT
TGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG

consensusID : consensus_5962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 227
fasta sequence

                              [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTTNAC-TAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG]

[+] EMBL CD181182             [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTTNAC TAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG]
[+] EMBL CD181165             [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTT ACTTAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACA CGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG]




>consensus_5962#1
AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACT
GTGAAGACGCTAGCTTTTTNACTAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTG
CAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACAT
ATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5962#0      ------------------------------------------------------------
consensus_5962#1      AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACT 60
                                                                                  

consensus_5962#0      ---CATACA-TATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTG 56
consensus_5962#1      GTGAAGACGCTAGCTTTTTNACTAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTG 120
                          * **  **  ***   * * * **********************************

consensus_5962#0      CAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACAC-GAATACAT 115
consensus_5962#1      CAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACAT 180
                      ******************************* ******************* ********

consensus_5962#0      ATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCT 175
consensus_5962#1      ATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG------------- 227
                      ***********************************************             

consensus_5962#0      AATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTA 235
consensus_5962#1      ------------------------------------------------------------
                                                                                  

consensus_5962#0      AATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG 281
consensus_5962#1      ----------------------------------------------