cluster # 5993

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Schistosoma mansoni
cluster # 5993 cluster # 5993 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5993#0 length = 843 sequences # 2

consensus_5993#1 length = 333 sequences # 1

consensusID : consensus_5993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence

                              [CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATATATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACTTGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGAAATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGGAATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTAC-ATTATTT]

[+] EMBL CD081602             [CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATATATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACTTGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGAAATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGGAATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTAC ATTATT ]
[-] EMBL CD075425             [                                                                                                                                                                                                                                                                             CCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATTTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAATTTAATTTTTCTTTATTGAA TACAATTATTT]




>consensus_5993#0
CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATAT
ATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACT
TGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGA
AATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGG
AATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAA
ATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAA
GAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAA
ATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACAT
GCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTT
TTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCG
ATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTA
GATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAA
AAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCT
ATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTACATTA
TTT

consensusID : consensus_5993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGAAAGAACATGTTAGAATGTTATGTTTAGTGAAACAATGACTAAATTCATATTTATGTGCCCGGCCACGTATTTTATCT]

[-] EMBL CD065531             [GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGAAAGAACATGTTAGAATGTTATGTTTAGTGAAACAATGACTAAATTCATATTTATGTGCCCGGCCACGTATTTTATCT]




>consensus_5993#1
GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAA
TCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCT
CAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTA
TTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTAT
CGTCGTCGTTCCATGAAAGAACATGTTAGAATGTTATGTTTAGTGAAACAATGACTAAAT
TCATATTTATGTGCCCGGCCACGTATTTTATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5993#0      CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATAT 60
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      ATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACT 120
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGA 180
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGG 240
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAA 300
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      ATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAA 360
consensus_5993#1      ----GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAA 56
                          ********************************************************

consensus_5993#0      GAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAA 420
consensus_5993#1      GAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAA 116
                      ************************************************************

consensus_5993#0      ATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACAT 480
consensus_5993#1      ATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACAT 176
                      ************************************************************

consensus_5993#0      GCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTT 540
consensus_5993#1      GCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTT 236
                      ************************************************************

consensus_5993#0      TTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCG 600
consensus_5993#1      TTATCGTCGTCGTTCCATGA-------AAGAACATGTTAGAATGTT------ATGTTTAG 283
                      *******************         *    *  *  **** **      * *  * *

consensus_5993#0      ATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTA 660
consensus_5993#1      TGAAACAATGACTAAAT-TCATATTTATGTGC--CCGGCCA---CGTATTTTATCT---- 333
                        *  **** *  **** **  ******      **** **    * * *   ***    

consensus_5993#0      GATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAA 720
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCT 780
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      ATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTACATTA 840
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TTT 843
consensus_5993#1      ---