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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence
[TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCATATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTTTACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGACCTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTTTATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCTAAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGTCCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTATGCACATATT]
[+] EMBL CD083374 [TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCATATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTTTACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGACCTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTC ]
[+] EMBL CD083011 [ agggAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTC CAACTACTCAATCACGTTTGGAGTCATTTTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTTTATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCTAAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGTCCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTATGCACATATT]
consensusID : consensus_5994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGTAAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGTCCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATTATGCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTTAATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACCAATGGCTTCTCTTGTTCGT]
[-] EMBL CD167178 [AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGTAAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGTCCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATTATGCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTTAATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACCAATGGCTTCTCTTGTTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5994#0 TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCAT 60
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 ATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTT 120
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 TACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGAC 180
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 CTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCC 240
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 CATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAAT 300
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 AATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGA 360
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 TTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGT 420
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 TCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACT 480
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 TGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTT 540
consensus_5994#1 ------------------------------------------------------------
consensus_5994#0 TATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCT 600
consensus_5994#1 ----------------AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGT 44
** ****** * * * * ******* ** ****** ** *
consensus_5994#0 AAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATT 660
consensus_5994#1 AAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATT 104
**** ***** * ***********************************************
consensus_5994#0 AGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGT 720
consensus_5994#1 AGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGT 164
*** *********************************** **** * ********* **
consensus_5994#0 CCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTAT 780
consensus_5994#1 CCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATT-AT 223
** **** ************ ******** **************** ******** **
consensus_5994#0 GCA-CATATT-------------------------------------------------- 789
consensus_5994#1 GCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTT 283
*** ******
consensus_5994#0 ------------------------------------------------------------
consensus_5994#1 AATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACC 343
consensus_5994#0 -------------------
consensus_5994#1 AATGGCTTCTCTTGTTCGT 362
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||