cluster # 6029

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6029 cluster # 6029 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6029#0 length = 454 sequences # 1
consensus_6029#1 length = 372 sequences # 1

consensus_6029#2 length = 357 sequences # 1
consensus_6029#3 length = 276 sequences # 1

consensusID : consensus_6029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG]

[+] EMBL CD197466             [TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG]




>consensus_6029#0
TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTT
GTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAA
GAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATA
TGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGAT
GTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCCGTCCTGTTGACAG
CCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAA
AGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGT
TGGAATATGAGAACCGGTTGTTGTCCAGATCCTG

consensusID : consensus_6029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [TTACCATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTTATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATTCACAAAGAAAGAAATCAAGGTCAACAATAAACTCATTTGGATAATGAATTTGGTTTTAAATTGGTTAATTAACTGCACTAAGAGCACCTACCACGAATACGTCGTCCAGATAGACGTTCGTGAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGA]

[+] EMBL CD113644             [TTACCATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTTATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATTCACAAAGAAAGAAATCAAGGTCAACAATAAACTCATTTGGATAATGAATTTGGTTTTAAATTGGTTAATTAACTGCACTAAGAGCACCTACCACGAATACGTCGTCCAGATAGACGTTCGTGAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGA]




>consensus_6029#1
TTACCATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAAT
TTTATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATTCACAAAGAAAGAAATCAAG
GTCAACAATAAACTCATTTGGATAATGAATTTGGTTTTAAATTGGTTAATTAACTGCACT
AAGAGCACCTACCACGAATACGTCGTCCAGATAGACGTTCGTGAACGCCGTCCTGTTGAC
AGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTG
AAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTT
GTTGGAATATGA

consensusID : consensus_6029#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGAACATGGTCAATTGCCACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCCAAAGTA]

[-] EMBL CD153021             [CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGAACATGGTCAATTGCCACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCCAAAGTA]




>consensus_6029#2
CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGAC
GAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACA
CGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTC
CAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAAC
CAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGAACATGGTCAATTGC
CACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCCAAAGTA

consensusID : consensus_6029#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCTCGAATTCTGTAGCTAATAACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGTAGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATGTTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTTTGAGTGCTTGACATACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT]

[+] EMBL CD149006             [GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCTCGAATTCTGTAGCTAATAACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGTAGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATGTTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTTTGAGTGCTTGACATACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT]




>consensus_6029#3
GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCTCGAATTCTGTAGCTA
ATAACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGTAGATGATCCAA
GCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATGTTCCACAACTG
GTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTTTGAGTGCTTGACATA
CTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6029#0      -----------TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGAC 49
consensus_6029#2      CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGAC 60
consensus_6029#1      -------------------------------------------------------TTACC 5
consensus_6029#3      ------------------------------------------------------------
                                                                                  

consensus_6029#0      GAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTAC-TGTGAGAACTGGTTTAGAC 108
consensus_6029#2      GAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTAC-TGTGAGAACTGGTTTAGAC 119
consensus_6029#1      --ATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTT 63
consensus_6029#3      ------------------------------------------------------------
                                                                                  

consensus_6029#0      ACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGT 168
consensus_6029#2      ACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGT 179
consensus_6029#1      ATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATT--CACAAAGAAAGAAAT----- 116
consensus_6029#3      ---GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCT--CGAAT----T 51
                                *  *      *  *      *    *     *          ***     

consensus_6029#0      CCAGAGTTAATA-TGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCA 227
consensus_6029#2      CCAGAGTTAATA-TGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCA 238
consensus_6029#1      -CAAGGTCAACAATAAACTCATTTGGATAATGAATT---TGGTTTTAAATTGGTTAATTA 172
consensus_6029#3      CTGTAGCTAATA--ACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGT 109
                           *  ** *      * *                  *** *    *    *      

consensus_6029#0      ACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCC 287
consensus_6029#2      ACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGA-ACATGGTCAAT 297
consensus_6029#1      ACTGCACTAAGAGCACCTACCACGAATA-CGTC--GTCCAGATAGACGTTCGTGAACGCC 229
consensus_6029#3      AGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATG 169
                      *    *   *        *        * *         **           *   *   

consensus_6029#0      GTCC-TGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTA 346
consensus_6029#2      TGCC------ACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCC 351
consensus_6029#1      GTCC-TGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTA 288
consensus_6029#3      TTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTT-TGA 228
                        **          ***  *      * *                *   *  *       

consensus_6029#0      TTGATTGCCGTGAAAGAGATTGAT--CAGCAGATGATAATGAAGTTATTTGTGAAGTATT 404
consensus_6029#2      AAAGTA------------------------------------------------------ 357
consensus_6029#1      TTGATTGCCGTGAAAGAGATTGAT--CAGCAGATGATAATGAAGTTATTTGTGAAGTATT 346
consensus_6029#3      GTGCTTGACAT-ACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT----------- 276
                          *                                                       

consensus_6029#0      TTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG 454
consensus_6029#2      --------------------------------------------------
consensus_6029#1      TTGTGACTGGGGTTGTTGGAATATGA------------------------ 372
consensus_6029#3      --------------------------------------------------