cluster # 603

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Schistosoma mansoni
cluster # 603 cluster # 603 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_603#0 length = 582 sequences # 1

consensus_603#1 length = 575 sequences # 1

consensusID : consensus_603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTAAGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCTAGGTGAAAGTAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAACTCGCCTGGATTACTCTTGCTCCAAAGTAATTGAAATTTGTGGATTAACTTCGTAGATTAACGAAACGTTGTAGACTGAATTGGAATAAGTCTAATTTAGGTTGAACACGTAGAATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCACCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTAGGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAGTAGATAGTTTTTGATAGTAGTTAGTTGACAGTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTATTGGTTATACCAGTGGATAAGTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT]

[+] EMBL CD154773             [TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTAAGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCTAGGTGAAAGTAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAACTCGCCTGGATTACTCTTGCTCCAAAGTAATTGAAATTTGTGGATTAACTTCGTAGATTAACGAAACGTTGTAGACTGAATTGGAATAAGTCTAATTTAGGTTGAACACGTAGAATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCACCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTAGGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAGTAGATAGTTTTTGATAGTAGTTAGTTGACAGTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTATTGGTTATACCAGTGGATAAGTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT]




>consensus_603#0
TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTA
AGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCTAGGTGAAAGT
AGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAAC
TCGCCTGGATTACTCTTGCTCCAAAGTAATTGAAATTTGTGGATTAACTTCGTAGATTAA
CGAAACGTTGTAGACTGAATTGGAATAAGTCTAATTTAGGTTGAACACGTAGAATTGCCT
GACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCACCGTAAAT
TTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTAGGCAGGCA
GTGGTCAAGAAAGTAAAATATTCTAGTAGATAGTTTTTGATAGTAGTTAGTTGACAGTGA
ATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTATTGGTTATACCAGTGGA
TAAGTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT

consensusID : consensus_603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGTCTAGGTTTCACGAAAAATATGATGGATAGACCTACTAAAGATTTATCAGGAGGTTGGAGAATGCGTGTCAGTCTGGCTAGAGCTTTATTTTTGGAACCGACACTCTTACTACTAGACGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAGATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTACAGATATCATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATTATAATAACTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAAAGAATATGAAAAACAAGAAAAACGTCTTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAAAAAATCAACGTGATGTATTAACAAGAAAACAGGCGAAAAATAAGCAAACTTCCAATGAAGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT]

[+] EMBL CD163023             [ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGTCTAGGTTTCACGAAAAATATGATGGATAGACCTACTAAAGATTTATCAGGAGGTTGGAGAATGCGTGTCAGTCTGGCTAGAGCTTTATTTTTGGAACCGACACTCTTACTACTAGACGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAGATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTACAGATATCATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATTATAATAACTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAAAGAATATGAAAAACAAGAAAAACGTCTTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAAAAAATCAACGTGATGTATTAACAAGAAAACAGGCGAAAAATAAGCAAACTTCCAATGAAGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT]




>consensus_603#1
ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGTCTAGGTTTCACG
AAAAATATGATGGATAGACCTACTAAAGATTTATCAGGAGGTTGGAGAATGCGTGTCAGT
CTGGCTAGAGCTTTATTTTTGGAACCGACACTCTTACTACTAGACGAACCGACGAATCAT
TTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAGATGGAAGAAAACTCTC
CTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTACAGATATCATCCATTTA
GACCAACGTCAGTTATTTTATTATAGAGGCAATTATAATAACTTCAAAAGTATGTTTATC
CAACGTAGAAAAGAACAATTGAAAGAATATGAAAAACAAGAAAAACGTCTTAAAGAATTA
AAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAAAAAATCAACGTGATGTATTAACA
AGAAAACAGGCGAAAAATAAGCAAACTTCCAATGAAGCTAATGATAATGGAAAACCACAA
TTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_603#0      TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTA 60
consensus_603#1      ------------ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGT 48
                                 ** ***   * *      **       *    **   *  **  **  

consensus_603#0      AGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCT-AGGTGAAAG 119
consensus_603#1      CTAGGTTTCACGAAAAATATGATGG-ATAGACCTACTAAAGATTTATCAGGAGGTTGGAG 107
                         *****    ** ** *** ** *  ***  * *  *    **     ****   **

consensus_603#0      TAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAA 179
consensus_603#1      AATGCGTGTCA-GTCTGGCTAGAGCTTTATT-TTTGGAACCGAC-ACTCTTACTACTAGA 164
                      *  **    * **  * *   *     *** *  * **   ** *     * **  * *

consensus_603#0      CTCGCC--TGGATTACTCTTGCTCCAAAGTAATTGAA--ATTTGTGGATTAACTTCGTAG 235
consensus_603#1      CGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAG 224
                     *   **   * ** * *     *  ** * * **  *   ** *   **** ****  **

consensus_603#0      ATTAACGAAA-CGTTGTAGACTGAATTGGA--ATAAGTCTAATTTAGGTTGAACACGTAG 292
consensus_603#1      ATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTAC 284
                     **  * **** *  *   ** **  *   *  *  ****    **** *       *** 

consensus_603#0      AATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCA 352
consensus_603#1      AGATATC--ATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATT-ATAATAA 341
                     *  *  *  *   * **  * ***  **    ***  *  * *     * ** * * * *

consensus_603#0      CCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTA 412
consensus_603#1      CTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAA---AGAATATGAAAAACA 398
                     *   ***  * *     *   *       *    * ** **    ** *  ** ***  *

consensus_603#0      GGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAG--TAGATAGTTTTTGAT----AGTAG 466
consensus_603#1      AGAAAAACGTC-TTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAA 457
                      * *    **  * **  ** ***** * *** *  *   ** *     *     ** * 

consensus_603#0      TTAGTTGACA--GTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTAT 524
consensus_603#1      AAAATCAACGTGATGTATTAACAAGAAAACAGGCG-AAAAATAAGCAAACT-TCCAATGA 515
                       * *  **    ** ** * **  ** *       ** ***  ***   * ***  *  

consensus_603#0      TGGTTATACCAGTGGATAA--GTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT 582
consensus_603#1      AGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT 575
                      * * **   * **** **           *  **  *  * *   *   ***      *