cluster # 6069

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Schistosoma mansoni
cluster # 6069 cluster # 6069 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6069#0 length = 476 sequences # 2

consensus_6069#1 length = 289 sequences # 1
consensus_6069#2 length = 217 sequences # 1

consensusID : consensus_6069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 476
fasta sequence

                              [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG]

[+] EMBL AI975603             [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG]
[+] EMBL BF936108             [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAAAATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCAACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATC   ]




>consensus_6069#0
GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGG
GGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAAT
ACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTT
GAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCC
TAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCAC
CATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGAT
TTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAA
CTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG

consensusID : consensus_6069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGAGGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGAACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTTCAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCTTAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCACCATTATCTATTCGCTG]

[+] EMBL BG931326             [GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGAGGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGAACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTTCAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCTTAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCACCATTATCTATTCGCTG]




>consensus_6069#1
GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGAGGCACAAGCAAATGCATGCTCGTGTTG
GAGCGTGATCAGAGTCTAAGCATGTACTCCAGAACGAGAGATAGTCTTCTGTCGAGCCTC
TCCAACGATGACTGATGGCAATATGGTCTATTTCAGTCCATCGTTGGTTTGTTGCAGGTG
GTCGCCATGTTAGACGATGTCTCTCCTTATGCTTAAAATTAGTGTGTGCTAAAAATAAAC
GATTGTCTGAACACAGTTGCAATAGACGATCACCATTATCTATTCGCTG

consensusID : consensus_6069#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [CTCTAAACATGTATTCCAGAACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTTGAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCGTAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCACCATTATCTGTTCACTGA]

[+] EMBL BG931196             [CTCTAAACATGTATTCCAGAACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTTGAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCGTAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCACCATTATCTGTTCACTGA]




>consensus_6069#2
CTCTAAACATGTATTCCAGAACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACT
GATAGCAATTTGGTCTATTTGAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAA
ACGATGTCTCTCCTTATGCGTAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCA
CAGTTGCAACAGACGATCACCATTATCTGTTCACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6069#1      ---------------------------GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGA 33
consensus_6069#2      ------------------------------------------------------------
consensus_6069#0      GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGG 60
                                                                                  

consensus_6069#1      GGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGA 93
consensus_6069#2      ----------------------------------------CTCTAAACATGTATTCCAGA 20
consensus_6069#0      GGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAAT 120
                                                               ***** ** *** ****  

consensus_6069#1      ACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTT 153
consensus_6069#2      ACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTT 80
consensus_6069#0      ACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTT 180
                      **  * ** ** ***** *  *** * *****  ***** *** ***** ** **** **

consensus_6069#1      CAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCT 213
consensus_6069#2      GAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCG 140
consensus_6069#0      GAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCC 240
                       *** **********  * * ** * *** ********* ******************* 

consensus_6069#1      TAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCAC 273
consensus_6069#2      TAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCAC 200
consensus_6069#0      TAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCAC 300
                      *** *******  ********* ************** ** ****** * **********

consensus_6069#1      CATTATCTATTCGCTG-------------------------------------------- 289
consensus_6069#2      CATTATCTGTTCACTGA------------------------------------------- 217
consensus_6069#0      CATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGAT 360
                      *******  ***  **                                            

consensus_6069#1      ------------------------------------------------------------
consensus_6069#2      ------------------------------------------------------------
consensus_6069#0      TTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAA 420
                                                                                  

consensus_6069#1      --------------------------------------------------------
consensus_6069#2      --------------------------------------------------------
consensus_6069#0      CTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG 476