cluster # 6075

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Schistosoma mansoni
cluster # 6075 cluster # 6075 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6075#0 length = 871 sequences # 2

consensus_6075#1 length = 468 sequences # 2

consensusID : consensus_6075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence

                              [CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGCAATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGGCCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGGAACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTAAAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATCCATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCATTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAACAAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATNTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTTTTGAGCATATTCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGATACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTTCTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCATTAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCTTTTTATTAAGTGAACAATTTTCAACGAAAGTAC]

[+] EMBL CD115706             [CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGCAATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGGCCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGGAACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTAAAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATCCATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCATTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAACAAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATNTATGGTTTA                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD157267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTTTTGAGCATATTCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGATACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTTCTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCATTAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCTTTTTATTAAGTGAACAATTTTCAACGAAAGTAC]




>consensus_6075#0
CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGC
AATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGG
CCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGG
AACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTA
AAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATC
CATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCA
TTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAAC
AAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGA
CTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGAT
TCTTGAAGGATNTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTT
TTGAGCATATTCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGATA
CAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTTCT
TGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCATTA
GGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCTTT
TTATTAAGTGAACAATTTTCAACGAAAGTAC

consensusID : consensus_6075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 468
fasta sequence

                              [TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTTTTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAACTTGTCATG]

[+] EMBL CD141482             [TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTT                                                                                                                      ]
[+] EMBL CD114907             [                                              TTTCCTAGTTAAAAAACAAAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTCGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTTTTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAACTTGTCATG]




>consensus_6075#1
TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTACGATTTCCTAGTTAAAA
AACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCA
AGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTTGGTG
AACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAA
AGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCA
GTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTTTTTGTTGGAT
CCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTTTTGCATTATATCCAGCATCAG
CATTTGATGTAAATATAGCCGGATGTAAAATACGTATAACTTGTCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6075#0      CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGC 60
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      AATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGG 120
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      CCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGG 180
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      AACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTA 240
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      AAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATC 300
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      CATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCA 360
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      TTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAAC 420
consensus_6075#1      ------------------------------------------------------------
                                                                                  

consensus_6075#0      AAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGA 480
consensus_6075#1      ---------------------TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGA 39
                                            **************************************

consensus_6075#0      CTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGAT 540
consensus_6075#1      CTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGAT 99
                      **** ******************** ********* ************************

consensus_6075#0      TCTTGAAGGATNTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTT 600
consensus_6075#1      TCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTT 159
                      *********** ******* ****************************** ** ******

consensus_6075#0      TTGAGCATAT--TCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGA 658
consensus_6075#1      TTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGA 219
                      **********  **************** ** * ****************** *******

consensus_6075#0      TACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTT 718
consensus_6075#1      TACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGAT 279
                      ***** ************************* ****************** ******* *

consensus_6075#0      CTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCAT 778
consensus_6075#1      CATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGA 339
                      * *** **** *   ** ***** **   ***** ***************   *****  

consensus_6075#0      TAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCT 838
consensus_6075#1      TAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTT 399
                      ****     * *** ******* ** ** ***** ** ****** * ** ** **  * *

consensus_6075#0      TTTTATTAAGTGAA----CAATTTTCAACGAAAGTAC----------------------- 871
consensus_6075#1      TTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAA 459
                      **  ****  *  *    **   **  * * ** **                        

consensus_6075#0      ---------
consensus_6075#1      CTTGTCATG 468