cluster # 6078

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Schistosoma mansoni
cluster # 6078 cluster # 6078 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6078#0 length = 769 sequences # 3

consensus_6078#1 length = 166 sequences # 1

consensusID : consensus_6078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 769
fasta sequence

                              [AAAAAAAAACCTAGTCTACTTTATATTGAAATTTGTTGTCAACATTTTAAATGAAATTAGTAAATCTTTATTGTACTACTTACTTATTTATACTACTTGTTTGTATATAAGTAGTATGTGTTATTAGCTGAATTGAATTAGAAAGTAGAAAACAATCTAATCAATGTAGTATTGTTTTAATTCACCATTATCATCATCATCATCATCATCATTTATTTTGTATTGTTCACTACTTACGTGATGCATTTCCCTCCCTTCCCCCCTCTCTCTCTATCTCTACATGTAACCGATTTGTACTTGTTTACATAAGCTTATCATCATTATTATTATTGTCAGTGTTGTTGTTGTTCTTTTACACTCGTATATAGATATAGATGACAATCACTGTCTGCTTCATGGCACTTTTAACAAGTACTACACATCCATTTACACACCTTTTTTTATGTTTATCAGTAAGAGAATAAAAGTTTT-AAAAACATTAATCAGGAGGGGGGAGAGAATGTTGCTACTTCAA-TTTCATTACAGTTATGTCATTCAAATGATATATATATTCATTCTGTGATTTCTTCATTTATATATATATGTATACATATTAATGAAGTGTATCCATTTGTAACTGTGCAGCATAGATACACACATCCACATTTTCATAGATGCTTATAAAAAAAAACTGTTGTGTTTTATATTTTAACTTTCAGATCATGTCTTGTGTCACTTTGATGTAGATGCACTTAGTGTAAAATTGATGATCTTTACATACATACACACA]

[+] EMBL CD085551             [AAAAAAAAACCTAGTCTACTTTATATTGAAATTTGTTGTCAACATTTTAAATGAAATTAGTAAATCTTTATTGTACTACTTACTTATTTATACTACTTGTTTGTATATAAGTAGTATGTGTTATTAGCTGAATTGAATTAGAAAGTAGAAAACAATCTAATCAATGTAGTATTGTTTTAATTCACCATTATCATCATCATCATCATCATCATTTATTTTGTATTGTTCACTACTTACGTGATGCATTTCCCTCCCTTCCCCCCTCTCTCTCTATCTCTACATGTAACCGATTTGTACTTGTTTATATAAGCTTATCATCATTATTATTATTGTCAGTGTTGTTGTTGTTCTTCTACACCCGTACATAGATATAGATGACAATCACTGTCTGCTTCATGGCACTTTTAACAAGTACTACACATCCATTTACATACATTTT    TGTTTATCAGTAAGAGAATAAAAGTTTTAAAAAACATTAAT A GAGGGGaggg                                                                                                                                                                                                                                                                                  ]
[-] EMBL AI976042             [                                                                                                                                                                                                                                                                                               ctATTTGTACTTGTTTACATAAGCTTATCATCATTATTATTATTGTCAGTGTTGTTGTTGTTCTTTTACACTCGTATATAGATATAGATGACAATCACTGTTTGCTTCATGGCACTTTTAACAAGTTCTACACATCCATTTACACACCTTTTTTTATGTTTATCAGTAAGAGAATAAAAGTTTT AAAAACATTAATCAGGAGGGGGGAGAGAATGTTGCTACTTCAATTTTCATTACAGTTATGTCATTCAAATGATATATATATTCATTCTGTGATTTCTTCATTTATATATATATGTATACATATTAATGAAGTGTATCCATTTGTAACTGTGCAGCATAGATACACACATCCACATTTTCATAGATGCTTATAAAAAAAAACTGTTGTGTTTTATATTTTAACTTTCAGATCATGTCTTGTGTCACTTTGATGTAGATGCACTTAGTGTAAAATTGATGATCTTTACATACATACACACA]
[-] EMBL AI975693             [                                                                                                                                                                                                                                                                                                  TTTGTACTTGTTTACATAAGCTTATCATCATTATTATTATTGTCAGTGTTGTTGTTGTTCTTTTACACTCGTATATAGATATAGATGACAATCACTGTCTGTTTCATGGCACTTTTAACAAGTACTACACATCCATTTACACACCTTTTTTTATGTTTATCAGTAAGAGAATAAAAGTTTT AAAAACATTAATCAGGAGGGGGGAGAGATTGTTGCTACTTCAA TTTCATTACAGTTATGTCATTCAAATGATATATATATTCATTCTGTGATTTCTTCATTTATATATATATGTATACATATTAATGAAGTGTATCCATTTGTAACTGTGCAGCATAGATACACACATCCACATTTTCATAGATGCTTATAAAAAAAAACTGTTGTGTTTTATATTTTAACTTTCAGATCATGTCTTGTGTCACTTTGATGTAGATGCACTTAGTGTAAAATTGATGATCTTTACATACATACACACA]




>consensus_6078#0
AAAAAAAAACCTAGTCTACTTTATATTGAAATTTGTTGTCAACATTTTAAATGAAATTAG
TAAATCTTTATTGTACTACTTACTTATTTATACTACTTGTTTGTATATAAGTAGTATGTG
TTATTAGCTGAATTGAATTAGAAAGTAGAAAACAATCTAATCAATGTAGTATTGTTTTAA
TTCACCATTATCATCATCATCATCATCATCATTTATTTTGTATTGTTCACTACTTACGTG
ATGCATTTCCCTCCCTTCCCCCCTCTCTCTCTATCTCTACATGTAACCGATTTGTACTTG
TTTACATAAGCTTATCATCATTATTATTATTGTCAGTGTTGTTGTTGTTCTTTTACACTC
GTATATAGATATAGATGACAATCACTGTCTGCTTCATGGCACTTTTAACAAGTACTACAC
ATCCATTTACACACCTTTTTTTATGTTTATCAGTAAGAGAATAAAAGTTTTAAAAACATT
AATCAGGAGGGGGGAGAGAATGTTGCTACTTCAATTTCATTACAGTTATGTCATTCAAAT
GATATATATATTCATTCTGTGATTTCTTCATTTATATATATATGTATACATATTAATGAA
GTGTATCCATTTGTAACTGTGCAGCATAGATACACACATCCACATTTTCATAGATGCTTA
TAAAAAAAAACTGTTGTGTTTTATATTTTAACTTTCAGATCATGTCTTGTGTCACTTTGA
TGTAGATGCACTTAGTGTAAAATTGATGATCTTTACATACATACACACA

consensusID : consensus_6078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [CTATCTCTACATGTATACCGATTTGTACTTGTTTATATAAGCTTATCATCATTATTATTATTGTCAGTGCTTGCTTCGCTTGCTTCTTTCTACGATCCCGTACATAGATAAGAGTCACATCACTGTCGTATCCTTACTGGCACTTTTAACAAGATCTACACATCCA]

[+] EMBL AA917138             [CTATCTCTACATGTATACCGATTTGTACTTGTTTATATAAGCTTATCATCATTATTATTATTGTCAGTGCTTGCTTCGCTTGCTTCTTTCTACGATCCCGTACATAGATAAGAGTCACATCACTGTCGTATCCTTACTGGCACTTTTAACAAGATCTACACATCCA]




>consensus_6078#1
CTATCTCTACATGTATACCGATTTGTACTTGTTTATATAAGCTTATCATCATTATTATTA
TTGTCAGTGCTTGCTTCGCTTGCTTCTTTCTACGATCCCGTACATAGATAAGAGTCACAT
CACTGTCGTATCCTTACTGGCACTTTTAACAAGATCTACACATCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6078#0      AAAAAAAAACCTAGTCTACTTTATATTGAAATTTGTTGTCAACATTTTAAATGAAATTAG 60
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      TAAATCTTTATTGTACTACTTACTTATTTATACTACTTGTTTGTATATAAGTAGTATGTG 120
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      TTATTAGCTGAATTGAATTAGAAAGTAGAAAACAATCTAATCAATGTAGTATTGTTTTAA 180
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      TTCACCATTATCATCATCATCATCATCATCATTTATTTTGTATTGTTCACTACTTACGTG 240
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      ATGCATTTCCCTCCCTTCCCCCCTCTCTCTCTATCTCTACATGTA-ACCGATTTGTACTT 299
consensus_6078#1      ------------------------------CTATCTCTACATGTATACCGATTTGTACTT 30
                                                    *************** **************

consensus_6078#0      GTTTACATAAGCTTATCATCATTATTATTATTGTCAGTG-TTGTTG---TTGTTCTTTTA 355
consensus_6078#1      GTTTATATAAGCTTATCATCATTATTATTATTGTCAGTGCTTGCTTCGCTTGCTTCTTTC 90
                      ***** ********************************* *** *    *** *  *** 

consensus_6078#0      CAC----TCGTATATAGATATAGATGACAATCACTGTC---TGCTTCATGGCACTTTTAA 408
consensus_6078#1      TACGATCCCGTACATAGATAAGAGTCACA-TCACTGTCGTATCCTTACTGGCACTTTTAA 149
                       **     **** *******    * *** ********   * ***  ************

consensus_6078#0      CAAGTACTACACATCCATTTACACACCTTTTTTTATGTTTATCAGTAAGAGAATAAAAGT 468
consensus_6078#1      CAAGATCTACACATCCA------------------------------------------- 166
                      ****  ***********                                           

consensus_6078#0      TTTAAAAACATTAATCAGGAGGGGGGAGAGAATGTTGCTACTTCAATTTCATTACAGTTA 528
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      TGTCATTCAAATGATATATATATTCATTCTGTGATTTCTTCATTTATATATATATGTATA 588
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      CATATTAATGAAGTGTATCCATTTGTAACTGTGCAGCATAGATACACACATCCACATTTT 648
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      CATAGATGCTTATAAAAAAAAACTGTTGTGTTTTATATTTTAACTTTCAGATCATGTCTT 708
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      GTGTCACTTTGATGTAGATGCACTTAGTGTAAAATTGATGATCTTTACATACATACACAC 768
consensus_6078#1      ------------------------------------------------------------
                                                                                  

consensus_6078#0      A 769
consensus_6078#1      -