cluster # 6079

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Schistosoma mansoni
cluster # 6079 cluster # 6079 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6079#0 length = 419 sequences # 2

consensus_6079#1 length = 264 sequences # 1
consensus_6079#2 length = 213 sequences # 1

consensusID : consensus_6079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGCGCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCCACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACCTACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTTGATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGTCCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACCGAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA]

[+] EMBL AI976071             [GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGCGCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCCACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACCTACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTTGATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGTCCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACCGAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA]
[+] EMBL AI975940             [GTGGCCGATGGGGACGTTGGTCGCAGGTCAAATATCGGGGGTCGTTCACTGCAACTGAGCGCAGACCAAAACCTGTTTCTGGCTGGC                                                                                                                                                                                                                                                                                                                                            ]




>consensus_6079#0
GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGC
GCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCC
ACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACC
TACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTT
GATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGT
CCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACC
GAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA

consensusID : consensus_6079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCCACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGACATCGAGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCTGATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC]

[-] EMBL BG931922             [TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCCACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGACATCGAGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCTGATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC]




>consensus_6079#1
TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACTACAAACTGTTTCT
GGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCCACTTGGCGTCCTCCCTCTGC
ATCCCAAGCCTAGACATCGAGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGC
TCCTTTTGGAGTACCTATCTGGAGTCTGATCATGCCCTGGTCTGCGCCAATCTCACCTTA
CTTTTCAGTGGCCGAAGGATAGAC

consensusID : consensus_6079#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCCACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA]

[+] EMBL BG931155             [ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCCACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGCTACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA]




>consensus_6079#2
ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGCACAGACCACAAC
CTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCCACCTGGCGTCCT
CCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGCTACCGCTGGCGT
GGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6079#0      GTGGCCGATGGGGACGTTGGTCGCAGGTCAGATATCGGGGGTCGTTCACTGCAACTGTGC 60
consensus_6079#2      ------------ATCGTTGGTCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGC 48
consensus_6079#1      --------------------TCGCAGGACAGATAACGGGGACCGTTTGCTGCAACTGTGC 40
                                          ******* ****** *****  ****  ************

consensus_6079#0      GCAGACCAAAACCTGTTTCTGGCTGGCACTAACTTCCGGCATATTCATCGCCAATATGCC 120
consensus_6079#2      ACAGACCACAACCTGTTTCTGGCTAGCACTAACTTCCGGCACAGTCATCGCCAGTGTGCC 108
consensus_6079#1      ACAGACTACAAACTGTTTCTGGCCAGCACTAACTTCCGGCACAGTCATCGCCGGTGTGCC 100
                       ***** * ** ***********  **************** * ********  * ****

consensus_6079#0      ACCTGGCGTCCTCCCTCTACATCTCAAGCCTGAACTCAGATTGATCACATCTCGGTCACC 180
consensus_6079#2      ACCTGGCGTCCTCCCTCTGCATCTCAAGCCTGGACTCAGATTGATCACATCGCGATCAGC 168
consensus_6079#1      ACTTGGCGTCCTCCCTCTGCATCCCAAGCCTAGAC-------------ATCGAGATCAGC 147
                      ** *************** **** *******  **             ***  * *** *

consensus_6079#0      TACCGCTGGCGCGGTTGTGTACAAGACTGCCACTCCTTTCGGAGCACCTATTCGGACGTT 240
consensus_6079#2      TACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGA--------------- 213
consensus_6079#1      TACCGCTGGCGTGGTTGTGTACAAGACTGCCGCTCCTTTTGGAGTACCTATCTGGAGTCT 207
                      *********** ******************* ******* ****                

consensus_6079#0      GATCATGCCCTTGTTTGCACCAATCTTACCTTACTTTTCAGTGGCCAACGAATTCATCGT 300
consensus_6079#2      ------------------------------------------------------------
consensus_6079#1      GATCATGCCCTGGTCTGCGCCAATCTCACCTTACTTTTCAGTGGCCGAAGGATAGAC--- 264
                                                                                  

consensus_6079#0      CCTAAACGGATTGATTTCAGTAAATTGATTGCAGCTTCTGTTGCGACTAAGTATCANACC 360
consensus_6079#2      ------------------------------------------------------------
consensus_6079#1      ------------------------------------------------------------
                                                                                  

consensus_6079#0      GAGCTATGTTTTAGGCTAGCTACCATCCCACCATAAAGTATAGATGAGCATTGNGTGCA 419
consensus_6079#2      -----------------------------------------------------------
consensus_6079#1      -----------------------------------------------------------