cluster # 6083

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6083 cluster # 6083 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6083#0 length = 934 sequences # 3

consensus_6083#1 length = 387 sequences # 1

consensusID : consensus_6083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 934
fasta sequence

                              [GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATGGACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTAGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACTTTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTACCTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATTCTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGACATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTCAAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGGGAATTTCCCTGATAAAATTTCTGATCTTTGGAAT]

[+] EMBL CD115554             [GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATGGACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTAGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGT                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD115498             [                                                                                   CTT ATTCACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD115307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TATCATTGTTTGCGTATCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACTTTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTACCTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATTCTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGACATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTCAAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGGGAATTTCCCTGATAAAATTTCTGATCTTTGGAAT]




>consensus_6083#0
GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATG
GACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTG
GTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTA
GTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGT
ACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAA
TTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTG
ATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTG
CATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTT
CTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGC
GACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACT
TTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTAC
CTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATT
CTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGA
CATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTC
AAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGG
GAATTTCCCTGATAAAATTTCTGATCTTTGGAAT

consensusID : consensus_6083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGTACGGAGAAGCAGTTGAATTTATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACTTACAACCTCAACAGGTTCACACATTTTATGAAGCTGTAGG]

[-] EMBL CD187187             [GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGTACGGAGAAGCAGTTGAATTTATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACTTACAACCTCAACAGGTTCACACATTTTATGAAGCTGTAGG]




>consensus_6083#1
GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGA
ACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGG
TCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCT
TTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCAT
TAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGTACGGAGAAGCAGTTGA
ATTTATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACTTACAACCTCAACA
GGTTCACACATTTTATGAAGCTGTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6083#0      GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATG 60
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      GACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTG 120
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      GTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTA 180
consensus_6083#1      ----------GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTG 50
                                ************************************************* 

consensus_6083#0      GTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGT 240
consensus_6083#1      GTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGT 110
                      ************************************************************

consensus_6083#0      ACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAA 300
consensus_6083#1      ACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAA 170
                      ************************************************************

consensus_6083#0      TTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTG 360
consensus_6083#1      TTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTG 230
                      ************************************************************

consensus_6083#0      ATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTG 420
consensus_6083#1      ATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAG-TACGGA 289
                      ***************************************************** ****  

consensus_6083#0      CATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTT 480
consensus_6083#1      GAAGCAGTTGAATTT--ATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACT 347
                       *     *  *** *  **** *     *  * *  ****  *******  *    *  *

consensus_6083#0      CTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGC 540
consensus_6083#1      TACAACCTCAACAGGTT-CACACATTTTATGAAGCTGTAGG------------------- 387
                        *  **  ** * **  *    *****   ** *                         

consensus_6083#0      GACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACT 600
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      TTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTAC 660
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      CTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATT 720
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      CTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGA 780
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      CATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTC 840
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      AAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGG 900
consensus_6083#1      ------------------------------------------------------------
                                                                                  

consensus_6083#0      GAATTTCCCTGATAAAATTTCTGATCTTTGGAAT 934
consensus_6083#1      ----------------------------------