cluster # 6096

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Schistosoma mansoni
cluster # 6096 cluster # 6096 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6096#0 length = 477 sequences # 3

consensus_6096#1 length = 226 sequences # 1

consensusID : consensus_6096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 477
fasta sequence

                              [GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTTAAT-GAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCTTTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT]

[+] EMBL CD147782             [GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTTAAT GAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTG                                                 ]
[+] EMBL CD160189             [                                            caTAGTCGGTATTCTTAATAGAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGACTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCT                                        ]
[-] EMBL CD195638             [                                                                                                                                                                   tTTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCATTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT]




>consensus_6096#0
GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTT
AATGAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCG
GATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACAT
CATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTA
GCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTG
GAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCA
TTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGAT
GTCACTTGGTGGCCTCTTTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT

consensusID : consensus_6096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGCACTTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAAGTAGGACAATGCAAAACAGTCAAAATACGTCAAATCAAATAGGTATGAAAAATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCGAAGATATATCTTCCTTCAATTG]

[+] EMBL CD130330             [TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGCACTTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAAGTAGGACAATGCAAAACAGTCAAAATACGTCAAATCAAATAGGTATGAAAAATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCGAAGATATATCTTCCTTCAATTG]




>consensus_6096#1
TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGCACTTTCAAAATCTTCTGTAAC
CAGAAATATTTTCATGACTGTCCTTAGACCTAAGTAGGACAATGCAAAACAGTCAAAATA
CGTCAAATCAAATAGGTATGAAAAATTTATTCGACTTAACCTTAGTTAACAAAGTTCCAT
AAGGAAATAGCACGAATAAATCCGAAGATATATCTTCCTTCAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6096#0      GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTT 60
consensus_6096#1      ------------------------------------------------------------
                                                                                  

consensus_6096#0      AATGAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCG 120
consensus_6096#1      ------------------------------------------------------------
                                                                                  

consensus_6096#0      GATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACAT 180
consensus_6096#1      ------------------------------------------------------------
                                                                                  

consensus_6096#0      CATATCATTCGACAGCTTCTAAGAAAAAATTTG-GGGATACATGCGTTTCAAATGAGTTT 239
consensus_6096#1      ---------------------TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGC 39
                                            * ***  * ** ****   *       ****  *    

consensus_6096#0      AGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTT 299
consensus_6096#1      AC--TTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAA-GTA 96
                      *   * **** ** * * ***        *  ***    *****  *** *   *  ** 

consensus_6096#0      GGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGC 359
consensus_6096#1      GGACAATGCAAA-ACAGTCAAAAT----ACGTCAAATCAAATA-------GGTATGAAAA 144
                      ***   ** *    *   ******    *** ** *** * **           ** *  

consensus_6096#0      ATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTG-GCCCATTGTTCTCGTAAAACCG 418
consensus_6096#1      ATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCG 204
                      ******** *     *   * **  *         *  *   ** *  *   **** ***

consensus_6096#0      ATGTCACTTGGTGGCCTCTTTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT 477
consensus_6096#1      AAGATATAT-----CTTCCTTCAATTG-------------------------------- 226
                      * *  *  *     * ** ** * *