|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGCGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGATAAAAAAGCGGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCAGAACAAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGGACCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGATATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGTTCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTGGAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTTACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGATCANA]
[+] EMBL CD128118 [GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGCGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGATAAAAAAGCGGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCAGAACAAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGGACCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGA ]
[+] EMBL CD116099 [ CCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGATATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGTTCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTGGAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTTACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGATCANA]
consensusID : consensus_6108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGTGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGATGAATTATTTGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCACACCAAATGCTAGCAATCAAGATGTACCCCTCATTTCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGCACCCGTATGAACGAGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCTGAT]
[+] EMBL CD127625 [AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGTGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGATGAATTATTTGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCACACCAAATGCTAGCAATCAAGATGTACCCCTCATTTCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGCACCCGTATGAACGAGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCTGAT]
consensusID : consensus_6108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[GTTGTGTAGTTCTGCAGAACGAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACGGGACCCGTAAGAACGAGGAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAAGTCTGTGGAATACAG]
[+] EMBL CD181249 [GTTGTGTAGTTCTGCAGAACGAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACGGGACCCGTAAGAACGAGGAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAAGTCTGTGGAATACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6108#0 GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGA 60
consensus_6108#1 --------------AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGA 46
consensus_6108#2 --------------------------------------GTTGTGTAGTTCTGCAGAACGA 22
** * * * * **
consensus_6108#0 GGACTATCTAATCAAGGCTGTA-CATCTCTTGAAAGGCGTGTC--TTACAAAGGCGTGTC 117
consensus_6108#1 GGACTATCTAATCAAGGCTGTA-CATCTCTTGAAAGGTGTGTC--TTACAAAGGCGTGTC 103
consensus_6108#2 AAGCAAGC-AATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATC 81
* * * ******* ** * ** ** * *** * * ** * **
consensus_6108#0 TAC----ACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGA 173
consensus_6108#1 TAC----ACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGA 159
consensus_6108#2 CAACGGGACCCGTAAGAACGAGGAGTCGAAAACCA-ATTGCATATTTGCTTGACCTGAAA 140
* *** * ** *** *** ** *** * * * * **** *
consensus_6108#0 TAAAAAAGCGGGAAGCTGAAGACTTAAAG--TTGTGTAGTTCTGCAGAACAAAAGCAAGC 231
consensus_6108#1 TGAATTATTTGGAAGCTGAAGACTTAAAG--TTGTGTAGTTCTGCACACCAAATGCTAGC 217
consensus_6108#2 TTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACT 200
* * * * ** ** * * **** * * * * *
consensus_6108#0 AATCAAGATGTTATCCTCATT-TCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGG- 289
consensus_6108#1 AATCAAGATGTACCCCTCATT-TCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGC 276
consensus_6108#2 CTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGAC 260
* * * * * ** **** * * * ** ** *
consensus_6108#0 ACCCGTAAGAACG---AGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCT 346
consensus_6108#1 ACCCGTATGAACG---AGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCT 333
consensus_6108#2 AGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAA---GTCTGTGGAATAC 317
* ** ** * * ** * * * * * **** ** ** **
consensus_6108#0 GATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGAT 406
consensus_6108#1 GAT--------------------------------------------------------- 336
consensus_6108#2 AG---------------------------------------------------------- 319
consensus_6108#0 ATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGT 466
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 TCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAA 526
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 CCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACA 586
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 GCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTG 646
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 GAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAG 706
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 AACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTT 766
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 ACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGA 826
consensus_6108#1 ------------------------------------------------------------
consensus_6108#2 ------------------------------------------------------------
consensus_6108#0 TCANA 831
consensus_6108#1 -----
consensus_6108#2 -----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||