cluster # 6112

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Schistosoma mansoni
cluster # 6112 cluster # 6112 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6112#0 length = 538 sequences # 3

consensus_6112#1 length = 274 sequences # 1

consensusID : consensus_6112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 538
fasta sequence

                              [GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGG-AATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAATGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATATGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCATCACTATTGNTATCGGNNNGCATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG]

[-] EMBL CD200745             [GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTGCTTATCGATCCTGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD179959             [                                                   GAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGG AATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAATGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATATGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCATCACTATTGNTATCGGNNNGCATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG]
[+] EMBL CD179903             [                                                   GAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGGAAATGGT AATCGTACAATAATAGTCCAAGGGTCAAA                                                                                                                                                                                               ]




>consensus_6112#0
GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGA
CACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAG
CCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACA
TACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACAT
TTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGG
TATAACTCAGGAATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAA
TGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATA
TGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCATCACTATTGNTATCGGNNNGC
ATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG

consensusID : consensus_6112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [ATAGAGTTAGTCATTTTTCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTATGTTATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGACGTGATCAGACCTCCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT]

[+] EMBL CD120135             [ATAGAGTTAGTCATTTTTCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTATGTTATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGACGTGATCAGACCTCCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT]




>consensus_6112#1
ATAGAGTTAGTCATTTTTCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTAT
CAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTATGTTA
TATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGACGTGATCAGACCTCCAATTAGAG
AGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTACGAGCAGTCTAGAGCGC
TTATCGATCCTGCTTCTGCCTACTCACTATTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6112#0      GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGA 60
consensus_6112#1      ------------------------------------------------------------
                                                                                  

consensus_6112#0      CACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAG 120
consensus_6112#1      ------------------------------------------------------------
                                                                                  

consensus_6112#0      CCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACA 180
consensus_6112#1      -----------------------------------------------------ATAGAGT 7
                                                                             * *  

consensus_6112#0      TACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACAT 240
consensus_6112#1      TAGTCATTTTTCACTCTCTA-AGTGTTATCTTGATATTTTGATTTAG------ATTTTAT 60
                      ** * * ***  *  *   * **  * * *   *  *   ***  *       **   **

consensus_6112#0      TTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGG 300
consensus_6112#1      CAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTAT--GT 118
                        **  **  **   *    *     **  ***           * ** * *  *   * 

consensus_6112#0      TATAACTCAGGAATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAA 360
consensus_6112#1      TATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGA----CGTGATCAGACCTCCAA 174
                      **** **  **   *          ** * *  **   *    *   ** *  *   ***

consensus_6112#0      TGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATA 420
consensus_6112#1      TTAGAGAGCAGTGAA-----------TTATCGATTGGAATAATGACACACGAAAACCTTA 223
                      * * **     ****           * **   ** * * *   *   *   **    **

consensus_6112#0      TGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCA-TCACTATTGNTATCGGNNNG 479
consensus_6112#1      CGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT--------- 274
                       *   *   * *  *  * ** *****      * ** * ********  *         

consensus_6112#0      CATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG 538
consensus_6112#1      -----------------------------------------------------------