cluster # 6137

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Schistosoma mansoni
cluster # 6137 cluster # 6137 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6137#0 length = 690 sequences # 3

consensus_6137#1 length = 470 sequences # 1

consensusID : consensus_6137#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 690
fasta sequence

                              [ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCTTCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGATTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTTCGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTAACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA-TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTGCCGCGTCTATCACAATACC]

[+] EMBL CD063616             [ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCTTCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGATTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTTCGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTAACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAA                                                                                                                                                                                             ]
[-] EMBL BG932552             [                                                                                                                                                                                                                                                                 ATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCGTGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTGCCGCGTCTATCACAATACC]
[-] EMBL CD115569             [                                                                                                                                                                                                                                                                                                                                   TAATGTTGAGTGTGTAGTGTCTGTCATAGGATAGTGCAAGCCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGCCCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCCTCAGCAGCTCT                                                                                                                                                                   ]




>consensus_6137#0
ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCT
TCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGA
TTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTT
CGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTA
ACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGAT
AAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCA
AACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTT
GGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAG
CTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTG
ACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGA
CGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAAT
GAACGTACCTGCCGCGTCTATCACAATACC

consensusID : consensus_6137#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [ATCAACTTCGCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAATACAT]

[+] EMBL CD126787             [ATCAACTTCGCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAATACAT]




>consensus_6137#1
ATCAACTTCGCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTA
GATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATAT
GCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCA
TTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCA
TAGCTCCAGATATCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGT
TTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGT
GTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTTTGTA
AAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAATACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6137#0      ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCT 60
consensus_6137#1      ------------------------------------------------------------
                                                                                  

consensus_6137#0      TCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGA 120
consensus_6137#1      ------------------------------------------------------------
                                                                                  

consensus_6137#0      TTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTT 180
consensus_6137#1      ------------------------------------------------------------
                                                                                  

consensus_6137#0      CGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTA 240
consensus_6137#1      --------------------------------------------------------ATCA 4
                                                                              ** *

consensus_6137#0      ACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGAT 300
consensus_6137#1      ACTTCGCCC-ATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGAT 63
                      ****  *** **************************************************

consensus_6137#0      AAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCA 360
consensus_6137#1      AAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCA 123
                      ************************************************************

consensus_6137#0      AACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTT 420
consensus_6137#1      AACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTT 183
                      ************************************************************

consensus_6137#0      GGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAG 480
consensus_6137#1      GGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAG 243
                      ************************************************************

consensus_6137#0      CTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTG 540
consensus_6137#1      CTCCAGATATCTGAT------------------GCATCAGCAGCTCTGAAAAACGTTTTG 285
                      ***************                  ***************************

consensus_6137#0      ACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGA 600
consensus_6137#1      ACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGA 345
                      ************************************************************

consensus_6137#0      CGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAAT 660
consensus_6137#1      CGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAAT 405
                      ******************************** ***************************

consensus_6137#0      GAACGTACCTGCC------GCGTCTATCACAATACC------------------------ 690
consensus_6137#1      GAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAA 465
                      **********            *  * ** ** **                         

consensus_6137#0      -----
consensus_6137#1      TACAT 470