cluster # 6138

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Schistosoma mansoni
cluster # 6138 cluster # 6138 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6138#0 length = 850 sequences # 2

consensus_6138#1 length = 457 sequences # 1
consensus_6138#2 length = 309 sequences # 1

consensusID : consensus_6138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 850
fasta sequence

                              [CGAGGCAGAATCTGGCACGAGGGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTCGAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTAATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD084173             [CGAGGCAGAATCTGGCACGAGGGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATT                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AI395424             [                                                                                                                                                                                                                                                                                                                                                 TGAGCATTCTTGGCGACACCCAAGAATTG TATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATAAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTCGAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTAATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA]




>consensus_6138#0
CGAGGCAGAATCTGGCACGAGGGGAATTGCTAAAGAAATACATCATTTATACAAAAGACC
GTATTCATCCTAAGCTAAACCAAATGGAGTCAGGACAAGGTTGCTGCAGCTTACGCTGAT
CTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCG
GTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGAT
GATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGT
GTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAA
GAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTT
CGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGA
GCCAAGCAGATCAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCA
CATCATTTTGTGTATGATGCCAGTCGAAAAGTTATCGTTCATACGGTATAAATGACAATA
AATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATC
CTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTAAATATTATATACT
TCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGT
ACGTCTCATCGTTTTTTTTATGCTAATCAAATAAATTTTTGACCATTAATAAAAAAAAAA
AAAAAAAAAA

consensusID : consensus_6138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGATCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG]

[+] EMBL CD195570             [TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGATCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG]




>consensus_6138#1
TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAA
GAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGATCAGGA
CAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACC
AATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCA
TTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTC
ATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATT
TTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCA
AGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG

consensusID : consensus_6138#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [TATTATCATTATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACATACCCACATTTAGTTACTTTATTGATTTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATCAAATAAATTT]

[+] EMBL AW087127             [TATTATCATTATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACATACCCACATTTAGTTACTTTATTGATTTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATCAAATAAATTT]




>consensus_6138#2
TATTATCATTATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACATACCCACATT
TAGTTACTTTATTGATTTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTA
TACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATT
GACCTGTTATACTTATTTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGG
TCCTATGATTGTTGTAAAATACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATCA
AATAAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6138#0      ---------------------CGAGGCAGA-ATCTGGC-ACGAGG---GGAATTGCTAAA 34
consensus_6138#1      TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAA 60
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      GAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGG 94
consensus_6138#1      GAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGA-TCAGG 119
consensus_6138#2      --------------------------------------------------TATTATCATT 10
                                                                        *    ***  

consensus_6138#0      ACAA-GGTTGCTGCAGC-----TTACGCTGATCTAAGACGGGAATCCATGATAACTGGGA 148
consensus_6138#1      ACAA-GGTTGCTGCAGC-----TTACGCTGATCTAAGACGGGAATCCATGATAACTGGGA 173
consensus_6138#2      ATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACAT--ACCCACATTTAGTT--A 66
                      *  * *******  **      **** **  * * * **    * ***   * * *   *

consensus_6138#0      GCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTC 208
consensus_6138#1      GCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTC 233
consensus_6138#2      CTTTATTGAT--TTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACA 124
                        ***   **   * * *   *** * *** **** *    * *       *        

consensus_6138#0      GTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTT---AATATGGCTCTCCGTGTCA 265
consensus_6138#1      GTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTT---AATATGGCTCTCCGTGTCA 290
consensus_6138#2      GCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACC 184
                      * *  * ***  * * ** ***  **    **  * *    ****      *   ** * 

consensus_6138#0      TGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTT 325
consensus_6138#1      TGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTT 350
consensus_6138#2      TGTTATACTTATT--TAAATATTATATACTTCTATTTTATCAGAT--GTTTCATCCATGG 240
                      ** *  * * ***  *   ** *  * * ***  * * ** *  *   *   *   *   

consensus_6138#0      TCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAAC 385
consensus_6138#1      TCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAAC 410
consensus_6138#2      TCCTATGATTGTTGTAAAAT-ACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATC 299
                      **    **** ***    **      **     * *     *  ** ** *    *** *

consensus_6138#0      AGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGC 445
consensus_6138#1      AGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG------------- 457
consensus_6138#2      AAATAAATTT-------------------------------------------------- 309
                      *  **                                                       

consensus_6138#0      GCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTG 505
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      TTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTC 565
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      GAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCAC 625
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      TTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAAT 685
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      TATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCA 745
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      TGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTA 805
consensus_6138#1      ------------------------------------------------------------
consensus_6138#2      ------------------------------------------------------------
                                                                                  

consensus_6138#0      ATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA 850
consensus_6138#1      ---------------------------------------------
consensus_6138#2      ---------------------------------------------