cluster # 6192

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Schistosoma mansoni
cluster # 6192 cluster # 6192 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6192#0 length = 564 sequences # 2

consensus_6192#1 length = 237 sequences # 1
consensus_6192#2 length = 225 sequences # 1

consensusID : consensus_6192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTATGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCTACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTCCTTTACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTATAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCAATAGTTCTGGTAGAGTTCAGGTCAGAA]

[+] EMBL CD151657             [TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTATGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCTACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTCCTTTACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTATAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCAATAGTTCTGGTAGAGTTCAGGTCAGAA]
[+] EMBL CD120252             [                                                                                                                                                   CATAACTTGTGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATAT                                                                                                                                                           ]




>consensus_6192#0
TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTA
TGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCT
ACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTT
TCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCAC
TCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATC
CTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCA
CTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTCC
TTTACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTATAA
GCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCAATA
GTTCTGGTAGAGTTCAGGTCAGAA

consensusID : consensus_6192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [GAAGGATGCGGTTGGAGATATACCCTGTTACACGGGAAGCAGGAAGAACAGAGAGATAGCAATAGTGATGCTTACATTAATACTCAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCTTGTATGGATAAAAAATGGTGAGAAGATTATTCTGACTTGCGCCTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC]

[+] EMBL CD097357             [GAAGGATGCGGTTGGAGATATACCCTGTTACACGGGAAGCAGGAAGAACAGAGAGATAGCAATAGTGATGCTTACATTAATACTCAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCTTGTATGGATAAAAAATGGTGAGAAGATTATTCTGACTTGCGCCTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC]




>consensus_6192#1
GAAGGATGCGGTTGGAGATATACCCTGTTACACGGGAAGCAGGAAGAACAGAGAGATAGC
AATAGTGATGCTTACATTAATACTCAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGCAG
AGACCAGTAGCATTTGCAGTAGTGCTTGTATGGATAAAAAATGGTGAGAAGATTATTCTG
ACTTGCGCCTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC

consensusID : consensus_6192#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CTGAAGGCGAACCATATAGCAAGAAACTGTCGAGCACCAAGATCATGTGCCGTCAAAGGATGTGGTTGGAGACACCATACGTTGTTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGATAGTGATGCTTGCATTAATACTCATTTCTGTACGGAGGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCCTGTATGGATATNAAAATGGTG]

[+] EMBL CD090851             [CTGAAGGCGAACCATATAGCAAGAAACTGTCGAGCACCAAGATCATGTGCCGTCAAAGGATGTGGTTGGAGACACCATACGTTGTTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGATAGTGATGCTTGCATTAATACTCATTTCTGTACGGAGGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCCTGTATGGATATNAAAATGGTG]




>consensus_6192#2
CTGAAGGCGAACCATATAGCAAGAAACTGTCGAGCACCAAGATCATGTGCCGTCAAAGGA
TGTGGTTGGAGACACCATACGTTGTTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGA
TAGTGATGCTTGCATTAATACTCATTTCTGTACGGAGGGAAGTGTTAAGCGTATGCAGAG
ACCAGTAGCATTTGCAGTAGTGCCTGTATGGATATNAAAATGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6192#1      ------------------------------------------------------------
consensus_6192#2      ------------------------------------------------------------
consensus_6192#0      TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTA 60
                                                                                  

consensus_6192#1      ------------------------------------------------------------
consensus_6192#2      ------------------------------------------------------------
consensus_6192#0      TGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCT 120
                                                                                  

consensus_6192#1      ------------------------------------------------------------
consensus_6192#2      ---------------------------------CTGAAGGCGAACCATATAGCAAGAAAC 27
consensus_6192#0      ACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTT 180
                                                                                  

consensus_6192#1      ---------------------------GAAG---GATGCGGTTGGAGATA---TACCCTG 27
consensus_6192#2      TGTCGAGCACCAAGATCATGTGCCGTCAAAG---GATGTGGTTGGAGACACCATACGTTG 84
consensus_6192#0      TCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCAC 240
                                                   *    ***         **     *      

consensus_6192#1      TTA-CACGGGAAGCAGGAAGAACAGAGAGATAGCAAT-AGTGATGCTTACAT-TAATACT 84
consensus_6192#2      TTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGAT-AGTGATGCTTGCAT-TAATACT 142
consensus_6192#0      TCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATC 300
                      *    *  ***   *   ** *  **** ** *  ** * *  * **  *** * ***  

consensus_6192#1      CAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGC----AGAGACCAGTAGC---ATTTGC 137
consensus_6192#2      CATTTCTGTACGGAGGGAAGTGTTAAGCGTATGC----AGAGACCAGTAGC---ATTTGC 195
consensus_6192#0      C-TTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTC 359
                      *  * *** *  *      *   ***   **       * *  ***  * *   ***  *

consensus_6192#1      AGTAGTGCTTGTATGGATA-AAAA--------ATGGTGAGAAGATTATTCTGACTTGCGC 188
consensus_6192#2      AGTAGTGCCTGTATGGATATNAAA--------ATGGTG---------------------- 225
consensus_6192#0      ACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTC 419
                      * ** * *      ** *    *         ** * *                      

consensus_6192#1      CTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC----------- 237
consensus_6192#2      ------------------------------------------------------------
consensus_6192#0      CTTT--ACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTA 477
                                                                                  

consensus_6192#1      ------------------------------------------------------------
consensus_6192#2      ------------------------------------------------------------
consensus_6192#0      TAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCA 537
                                                                                  

consensus_6192#1      ---------------------------
consensus_6192#2      ---------------------------
consensus_6192#0      ATAGTTCTGGTAGAGTTCAGGTCAGAA 564