cluster # 6244

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Schistosoma mansoni
cluster # 6244 cluster # 6244 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6244#0 length = 945 sequences # 3

consensus_6244#1 length = 297 sequences # 1

consensusID : consensus_6244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 945
fasta sequence

                              [CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGTACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAAAATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGTAGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAATATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAATCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA]

[-] EMBL CD190251             [CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGTACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD190144             [                                                            ACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACACAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD084282             [                                                                                                                                                                                                                                                                                                                                                                                                                                           TTGGATCTTCCAGGCATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAAAATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGTAGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAATATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAATCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA]




>consensus_6244#0
CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGT
ACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATAT
TGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCT
GAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAA
AGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCC
ATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATC
ATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATAT
CCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACG
CCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAA
GCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAA
TAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATC
AATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAA
AATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGT
AGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAAT
ATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAA
TCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA

consensusID : consensus_6244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [CTCCCGNNGCCGCCATGGCGTGCCGCGGGAAATTCGATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA]

[+] EMBL CD130768             [CTCCCGNNGCCGCCATGGCGTGCCGCGGGAAATTCGATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA]




>consensus_6244#1
CTCCCGNNGCCGCCATGGCGTGCCGCGGGAAATTCGATTATAATAGAAGGGGCGTCACAA
GGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATG
ATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCT
GTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGT
GGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6244#0      CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGT 60
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      ACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATAT 120
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      TGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCT 180
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      GAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAA 240
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      AGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCC 300
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      ATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATC 360
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      ATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATAT 420
consensus_6244#1      ------------------------------------------CTCCCGNNGCCGCCATGG 18
                                                                 *      **    **  

consensus_6244#0      CCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACG 480
consensus_6244#1      CGTGCCGCGGGAAATTC-GATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACG 77
                      *  *     ***  ***     **************************************

consensus_6244#0      CCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAA 540
consensus_6244#1      CCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAA 137
                      ************************************************************

consensus_6244#0      GCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAA 600
consensus_6244#1      GCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAA 197
                      ************************************************************

consensus_6244#0      TAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATC 660
consensus_6244#1      TAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATC 257
                      ************************************************************

consensus_6244#0      AATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAA 720
consensus_6244#1      AATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA-------------------- 297
                      ****************************************                    

consensus_6244#0      AATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGT 780
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      AGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAAT 840
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      ATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAA 900
consensus_6244#1      ------------------------------------------------------------
                                                                                  

consensus_6244#0      TCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA 945
consensus_6244#1      ---------------------------------------------