cluster # 6259

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Schistosoma mansoni
cluster # 6259 cluster # 6259 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6259#0 length = 438 sequences # 1
consensus_6259#1 length = 376 sequences # 1

consensus_6259#2 length = 290 sequences # 1
consensus_6259#3 length = 181 sequences # 1

consensusID : consensus_6259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAGTGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCCTGTACCGATCAATAGTGCGATGTGGGGACGGAGAAGGTTAGCTCAGCCAACTGTTGGATATGTTGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA]

[+] EMBL CD084634             [GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAGTGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCCTGTACCGATCAATAGTGCGATGTGGGGACGGAGAAGGTTAGCTCAGCCAACTGTTGGATATGTTGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA]




>consensus_6259#0
GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGG
GGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAG
TGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCC
TGTACCGATCAATAGTGCGATGTGGGGACGGAGAAGGTTAGCTCAGCCAACTGTTGGATA
TGTTGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGT
GATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAA
GCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAA
GGCGCTTGAGAGAACTCA

consensusID : consensus_6259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [NNNNNNNNNNNNTTTTAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTTCCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA]

[+] EMBL AI394793             [NNNNNNNNNNNNTTTTAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTTCCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA]




>consensus_6259#1
NNNNNNNNNNNNTTTTAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGT
TATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTC
ATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTA
TGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGG
TATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTT
TTAAAACTTCCCTTTCCCCCCCTTCCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCG
TCCCTCTCGGAGAAGA

consensusID : consensus_6259#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTCCATCGCCGAACCAACACCACCGGCTACGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCAGTGCCAATGGTGCTTGAGATTCTCCGAGAAATCGCAGTGGACGCAAACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAATCGTACTTCCAAGGCCAAGGCTGAAGCCGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAAAA]

[+] EMBL CD161610             [TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTCCATCGCCGAACCAACACCACCGGCTACGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCAGTGCCAATGGTGCTTGAGATTCTCCGAGAAATCGCAGTGGACGCAAACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAATCGTACTTCCAAGGCCAAGGCTGAAGCCGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAAAA]




>consensus_6259#2
TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTCC
ATCGCCGAACCAACACCACCGGCTACGCTCCTGAAACTCATCAACCAACCACTCTTGTCG
CCGCCAGTGCCAATGGTGCTTGAGATTCTCCGAGAAATCGCAGTGGACGCAAACGGGTGC
ATTCGATTCCACCGCCCTATAATGACGTTCGTAATCGTACTTCCAAGGCCAAGGCTGAAG
CCGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAAAA

consensusID : consensus_6259#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [AAGGTTAGCTCAGCCAACTGTTGGAATAGTTGGTTCAAGCGTGTAGTCGTGCTCTTTAGGCAAATCCGGAGAGCTAAGATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC]

[-] EMBL CD087382             [AAGGTTAGCTCAGCCAACTGTTGGAATAGTTGGTTCAAGCGTGTAGTCGTGCTCTTTAGGCAAATCCGGAGAGCTAAGATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC]




>consensus_6259#3
AAGGTTAGCTCAGCCAACTGTTGGAATAGTTGGTTCAAGCGTGTAGTCGTGCTCTTTAGG
CAAATCCGGAGAGCTAAGATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGA
TACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6259#0      GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGG 60
consensus_6259#3      ------------------------------------------------------------
consensus_6259#2      ------------------------------------------------------------
consensus_6259#1      ------------------------------------------------------------
                                                                                  

consensus_6259#0      GGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAG 120
consensus_6259#3      ------------------------------------------------------------
consensus_6259#2      ------------------------------------------------------------
consensus_6259#1      ----------------------------------NNNNNNNNNNNNTTTTAAATAAATAA 26
                                                                                  

consensus_6259#0      TGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCC 180
consensus_6259#3      ------------------------------------------------------------
consensus_6259#2      -TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTC 59
consensus_6259#1      TTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTAT 86
                                                                                  

consensus_6259#0      TGT-ACCGATCAATAGTGCGATGTGGGGACGGAGA----AGGTTAGC--TCAGCCAACTG 233
consensus_6259#3      ----------------------------------A----AGGTTAGC--TCAGCCAACTG 20
consensus_6259#2      CATCGCCGAACCAACACCACCGGCTACGCTCCTGA----AACTCATCAACCAACCA-CTC 114
consensus_6259#1      TATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTT 146
                                                        *    *  * *      *      * 

consensus_6259#0      TTGGATATGTTGGTTCAAGCCT-GTAGTCGTGCCTGGTAGGCAA-ATC-CGCCGGGCTTA 290
consensus_6259#3      TTGGAATAGTTGGTTCAAGCGT-GTAGTCGTGCTCTTTAGGCAA-ATC-CGGAGAGCTAA 77
consensus_6259#2      TTGTCGCCGCCAGTGCCAATG--GTGCTTGAGATTCTCCGAGAA-ATCGCAGTGGACGCA 171
consensus_6259#1      TTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTT 206
                      **      *   *           *  *              ** *** *          

consensus_6259#0      GATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAA 350
consensus_6259#3      GATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAA 137
consensus_6259#2      AACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAAT--CGTACTTCCAAGGC 229
consensus_6259#1      CTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTG--GTTCTTCTGGATG 264
                                            **        *   *   *  *    * ****      

consensus_6259#0      AAGCCACTAAGC-TTCAGCTATTGACGACCGTACCG-CAAACCGACACTGGTGCGCGAGA 408
consensus_6259#3      AAGCCACTAAGC-TTCAGCTATTGACGACCGTACCG-CAAACCGAC-------------- 181
consensus_6259#2      CAAGGCTGAAGC-CGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAA 288
consensus_6259#1      TGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTT 324
                                *         *                  ** *  *              

consensus_6259#0      TGAGTATTCTAAGGCGCTTGAGAGAACTCA---------------------- 438
consensus_6259#3      ----------------------------------------------------
consensus_6259#2      AA-------------------------------------------------- 290
consensus_6259#1      CCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA 376