cluster # 6292

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Schistosoma mansoni
cluster # 6292 cluster # 6292 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6292#0 length = 740 sequences # 2

consensus_6292#1 length = 526 sequences # 1
consensus_6292#2 length = 387 sequences # 1

consensusID : consensus_6292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 740
fasta sequence

                              [AAATTTTGCTTTTAGTTCACGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATAGCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTTTTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGAGATCGATATTGCAACAAACAAGCGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAGAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTTAGAAAAACAAGTGTTAAATCGATCTATTAAACCTCGATATCCTGGAGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAATTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTCTCTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAACATCTGATGCGCCTGACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTGCTCAAGAGTTTGAGTCAGTTTCAGAACCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTCAAAGAATTTTCGGATTATTTAGCTTTATTACCAGAAG]

[+] EMBL CD199549             [AAATTTTGCTTTTAGTTCACGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATAGCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTTTTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGAGATCGATATTGCAACAAACAAGCGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAGAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTTAGAAAAACAAGTGTTAAATCGATCTATTAAA                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD137333             [                                                                                                                                                                                                     CTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAAAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTTAGAAAAACAAGTGTTAAATCGATCTATTAAACCTCGATATCCTGGAGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAATTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTCTCTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAACATCTGATGCGCCTGACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTGCTCAAGAGTTTGAGTCAGTTTCAGAACCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTCAAAGAATTTTCGGATTATTTAGCTTTATTACCAGAAG]




>consensus_6292#0
AAATTTTGCTTTTAGTTCACGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATA
GCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTT
TTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGAGATCGATATTGCA
ACAAACAAGCGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCT
AGAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACT
TCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATAT
AGAAAATGCAGATTTAGAAAAACAAGTGTTAAATCGATCTATTAAACCTCGATATCCTGG
AGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAATTGAATAA
GCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTCTCTTAATAA
GGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAACATCTGATGCGCCTGACATTGA
AAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTGCTCAAGAGTTTGAGTCAGTTTC
AGAACCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTCAAAGAATTTTCGGATTA
TTTAGCTTTATTACCAGAAG

consensusID : consensus_6292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CTTGACTATGTGCTCTTTCATTATTCTCAACTAGTTTTCTTATTCAATTGTGCATACCGTCCAAGCGCCGTCTTGGTGCATGTTTTTCGTGCCAAATTTTGCTTTTAATTCACGGCTGTTTTTACTTCATATGCTTGGGCAGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATAGCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTTTTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGGGATCGATATTGCAACAAACAAACGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAAAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTTAGAAGAACAAGTGTTAAATCGATCTATTAA]

[+] EMBL CD185891             [CTTGACTATGTGCTCTTTCATTATTCTCAACTAGTTTTCTTATTCAATTGTGCATACCGTCCAAGCGCCGTCTTGGTGCATGTTTTTCGTGCCAAATTTTGCTTTTAATTCACGGCTGTTTTTACTTCATATGCTTGGGCAGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATAGCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTTTTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGGGATCGATATTGCAACAAACAAACGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAAAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTTAGAAGAACAAGTGTTAAATCGATCTATTAA]




>consensus_6292#1
CTTGACTATGTGCTCTTTCATTATTCTCAACTAGTTTTCTTATTCAATTGTGCATACCGT
CCAAGCGCCGTCTTGGTGCATGTTTTTCGTGCCAAATTTTGCTTTTAATTCACGGCTGTT
TTTACTTCATATGCTTGGGCAGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTAT
AGCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGT
TTTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGGGATCGATATTGC
AACAAACAAACGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTC
TAAAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCAC
TTCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATA
TAGAAAATGCAGATTTAGAAGAACAAGTGTTAAATCGATCTATTAA

consensusID : consensus_6292#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [CCAGCTTCAATGAATGAATATATAGAAAATGCAGATTTATAAAACAAGTGTTAAATCGATCTATTAAACCTCGATATCCTGGAGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAATTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTTTCTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAACATCTGATGCGCCTGACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTGCTCAAGAGTTTGAGTCAGTTTCAGATCCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTCAAAGAATTCTCGGATTATTTAT]

[+] EMBL CD119728             [CCAGCTTCAATGAATGAATATATAGAAAATGCAGATTTATAAAACAAGTGTTAAATCGATCTATTAAACCTCGATATCCTGGAGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAATTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTTTCTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAACATCTGATGCGCCTGACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTGCTCAAGAGTTTGAGTCAGTTTCAGATCCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTCAAAGAATTCTCGGATTATTTAT]




>consensus_6292#2
CCAGCTTCAATGAATGAATATATAGAAAATGCAGATTTATAAAACAAGTGTTAAATCGAT
CTATTAAACCTCGATATCCTGGAGGGTCGCTCATATTATGGCTGGACTGTGCTTCCGACG
TTTTGAATACTCAATTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATG
AACTGGACACTTTTCTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAGACTGAAA
CATCTGATGCGCCTGACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGGCTTTGTTTG
CTCAAGAGTTTGAGTCAGTTTCAGATCCTATGTGTCGTCGTGGCCTACTTCAAAGTATCG
GGCTCAAAGAATTCTCGGATTATTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6292#0      AAATTTTGCTTTTAGTTCACGTCATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATA 60
consensus_6292#2      ------------------------------------------------------------
consensus_6292#1      ------------------------------------------------------------
                                                                                  

consensus_6292#0      GCTATTTGTGGAGCCACTGGGACTGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTT 120
consensus_6292#2      ------------------------------------------------------------
consensus_6292#1      ------------------------------------------------------------
                                                                                  

consensus_6292#0      TTCGGAGGTGAGGTCGTCAATTTCGATGCCCTTCAATTGTATAGTGAGATCGATATTGCA 180
consensus_6292#2      ------------------------------------------------------------
consensus_6292#1      ------------------------------------------------------------
                                                                                  

consensus_6292#0      ACAAACAAGCGAAGTTTCTTTTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCT 240
consensus_6292#2      ------------------------------------------------------------
consensus_6292#1      -------------------------------------CTTGACTATGTGCTCTTTCATTA 23
                                                                                  

consensus_6292#0      AGAACCAGATGTAGCCGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACT 300
consensus_6292#2      ------------------------------------------------------------
consensus_6292#1      TTCTCAACTAGTTTTCTTATTCAATTGTGCATACCGTCCAAGCGCCGTCTTGGTGCATGT 83
                                                                                  

consensus_6292#0      TCTCGATGTTCTGAGAGAATCTGTTCAAACTAAAACACAAACTGAA-TTGAATGAATATA 359
consensus_6292#2      -------------------------------------CCAGCTTCA-ATGAATGAATATA 22
consensus_6292#1      TTTTCGTGCCAAATTTTGCTTTTAATTCACGGCTGTTTTTACTTCATATGCTTGGGCAGT 143
                                                               **  *  **  **   *  

consensus_6292#0      TAGAAAATGCAGATTTAGAAAAACAAGT----GTTAAATCGATCTATTAAACCTCGATAT 415
consensus_6292#2      TAGAAAATGCAGATTTATAAAA-CAAGT----GTTAAATCGATCTATTAAACCTCGATAT 77
consensus_6292#1      CATGCTACTTAAGTTCATTTCGCCAGCTTCCTGTTATAGCTATTTGTGGAGCCACTGGGA 203
                       *    *   *  ** *      **  *    **** * * ** * *  * ** *     

consensus_6292#0      CCTGGAGGGTCG---CTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAA 472
consensus_6292#2      CCTGGAGGGTCG---CTCATATTATGGCTGGACTGTGCTTCCGACGTTTTGAATACTCAA 134
consensus_6292#1      C-TGGAAAATCAAAACTAGCAGTAAATCTCGCTAACGTTTTCGGAGGTGAGGTCGTCAAT 262
                      * ****   **    **   * **   ** *     * ** **  * *  *       * 

consensus_6292#0      TTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTCT 532
consensus_6292#2      TTGAATAAGCGGGTGAATAAAATGTTGGATTCCGGGTTAGTCGATGAACTGGACACTTTT 194
consensus_6292#1      TTCGAT--GCCCTTCAATTGTATAGTGGGATCGATATTG--CAACAAACAAACGAAGTTT 318
                      **  **  **   * ***   **  ***  **    **   * *  ***     *  * *

consensus_6292#0      CTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAG-ACTGAAACATCTGATGCGCC 591
consensus_6292#2      CTTAATAAGGTGGATGTTTTGCCACCTAGATTCAGTGAG-ACTGAAACATCTGATGCGCC 253
consensus_6292#1      CTT--TTATGCATCCATCGGAATGCTATGATCTTTTGCGTACTCTAAAACCAGATGTAGC 376
                      ***  * * *      *       *   ***    ** * ***  ** * * ****   *

consensus_6292#0      TG-ACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGG-------CTTTGTTTGCTCAA 643
consensus_6292#2      TG-ACATTGAAAAACGAATTCGAGTGGAAAAATTAAGGG-------CTTTGTTTGCTCAA 305
consensus_6292#1      CGCACAGTTGCATCCGAATAATGTTCGTAAAGTAAAGAAAGCACTTCTCGATGTTCTGAG 436
                       * *** *   *  *****     * * *** * ***         **   * * ** * 

consensus_6292#0      GAGTTTGAGTCAGTTTCAGAACCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTC 703
consensus_6292#2      GAGTTTGAGTCAGTTTCAGATCCTATGTGTCGTCGTGGCCTACTTCAAAGTATCGGGCTC 365
consensus_6292#1      AGAATCTGTTCAAACTAAAACACAAACTGAATTGAATGAATATATAGAAAATGCAGATTT 496
                          *    ***   * * *  * *  **   *    *  **  *  **    * *  * 

consensus_6292#0      AAAG----AATTTTCGGATT-ATTTAGCTTTATTACCAGAAG 740
consensus_6292#2      AAAG----AATTCTCGGATT-ATTTAT--------------- 387
consensus_6292#1      AGAAGAACAAGTGTTAAATCGATCTATTAA------------ 526
                      * *     ** * *   **  ** **