|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1142 fasta sequence
[AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA]
[+] EMBL CD118464 [AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA ]
[+] EMBL CD121633 [ AAGATTCTCCGATACAACACAACATGCACCAATCGAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCT ]
[+] EMBL CD096407 [ GTTGTCTACGTAAGATACTTCGGATCCGTTGGCCAGACACTACCAGCAACAAGCTACTGTGGGAGACAACAAACCAGATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA]
consensusID : consensus_6301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence
[GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA]
[+] EMBL CD188565 [GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6301#0 AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGA 60
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 CTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGAT 120
consensus_6301#1 --GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAAT 58
************************** ** ****** ***************** **
consensus_6301#0 GCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTC-ATCACACACGCAACGACA 179
consensus_6301#1 GCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACA 118
********** ****************************** ****** ******* ***
consensus_6301#0 AATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAA 239
consensus_6301#1 AATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAA 178
*********** **** *** ****************** ******************
consensus_6301#0 CAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA 299
consensus_6301#1 CAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGA 238
***** ****** ********************** ************************
consensus_6301#0 CGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACA 359
consensus_6301#1 TGGAGAAGCTTTGGAAGA------------------------------------------ 256
*********** ** **
consensus_6301#0 AGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCA 419
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 ATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAA 479
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 TACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCAT 539
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 CATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATG 599
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 GCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGA 659
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 AGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATG 719
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 CGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAA 779
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 GAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGA 839
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 ATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTC 899
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 CATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTG 959
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 ATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGA 1019
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 AAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACA 1079
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 AAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAG 1139
consensus_6301#1 ------------------------------------------------------------
consensus_6301#0 TTA 1142
consensus_6301#1 ---
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||