cluster # 6379

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Schistosoma mansoni
cluster # 6379 cluster # 6379 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6379#0 length = 440 sequences # 2

consensus_6379#1 length = 322 sequences # 2

consensusID : consensus_6379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 440
fasta sequence

                              [TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAA]

[+] EMBL CD135600             [TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTC                                                                                                            ]
[+] EMBL CD092865             [                                                                                                                                                                                                                                            CAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAA]




>consensus_6379#0
TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTG
AAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCT
ACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTT
TCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAA
TGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAG
ATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGT
TCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGA
TTGCCTTCCATGTCCTTGAA

consensusID : consensus_6379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 322
fasta sequence

                              [AATCTTCTGTNGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAATTG]

[-] EMBL CD165355             [AATCTTCTGTNGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAATTG]
[-] EMBL CD117195             [                                                                     TTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATC                                    ]




>consensus_6379#1
AATCTTCTGTNGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTA
TTGTGCGTTTTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTG
TTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGA
CCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCC
TAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATCCTCATCTTCACGAT
TGCCTTCCATGTCCTTGAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6379#0      TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTG 60
consensus_6379#1      ------------------------------------------AATCTTCTGTNGGAGGTG 18
                                                                ******     *******

consensus_6379#0      AAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCT 120
consensus_6379#1      AAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCT 78
                      ************************************************************

consensus_6379#0      ACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTT 180
consensus_6379#1      ----------------------------------------TGTAAACTTCTTCATATGTT 98
                                                              ********************

consensus_6379#0      TCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAA 240
consensus_6379#1      TCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAA 158
                      ************************************************************

consensus_6379#0      TGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAG 300
consensus_6379#1      TGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAG 218
                      ************************************************************

consensus_6379#0      ATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGT 360
consensus_6379#1      ATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGT 278
                      ************************************************************

consensus_6379#0      TCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGA 420
consensus_6379#1      TCCAC---------------------------------------ATCCTCATCTTCACGA 299
                      *****                                       ****************

consensus_6379#0      TTGCCTTCCATGTCCTTGAA--- 440
consensus_6379#1      TTGCCTTCCATGTCCTTGAATTG 322
                      ********************