cluster # 6388

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Schistosoma mansoni
cluster # 6388 cluster # 6388 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6388#0 length = 951 sequences # 2

consensus_6388#1 length = 313 sequences # 1
consensus_6388#2 length = 186 sequences # 1

consensusID : consensus_6388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence

                              [GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCCTGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCAAGAATCATTTATAAACCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGATCAAGAAAGTCTGCACCTGTCCAGTCTACCAATACCAAAGATGAACTAGCAACTGGTGGTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTATACAAGAAGTTAAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATATGCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATATATTTATTCAGGCAAGCAACTTCTGTAAAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCATTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAAATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAACAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTTCGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCCAATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTATAACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG]

[+] EMBL CD121034             [GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCCTGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCAAGAATCATTTATAAACCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGATCAAGAAAGTCTGCACCTGTCCAGTCTACCAATACCAAAGATGAACTAGCAACTGGTGGTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTATACAAGAAGTTAAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATATGCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATATA                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD117489             [                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATAAATTTATTCAGGCAAGCAACTTCTGTAAAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCATTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAAATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAACAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTTCGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCCAATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTATAACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG]




>consensus_6388#0
GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCC
TGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCA
AGAATCATTTATAAACCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGATC
AAGAAAGTCTGCACCTGTCCAGTCTACCAATACCAAAGATGAACTAGCAACTGGTGGTTT
GTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAACCGGA
ATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTATACAAGAAGTTAAAAA
TCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATATGCGCG
TACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAA
TTTGCCTATAATATCCATTATGACAATATATTTATTCAGGCAAGCAACTTCTGTAAAAGA
CAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCATTGAA
CGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAAATTAA
CTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAACAGAC
AGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTTCGTAA
ACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCCAATTC
ACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTATAACCA
TATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG

consensusID : consensus_6388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [ATCATTGGAACAGAATTACCAACTTCACCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCAAAACCAAATAAAAATTTAACGAAAAAATTCTGTGAATCAATTAGCAACGTTGAAACCAATATCGAAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAAAATCGATCAGTCATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTTAA]

[+] EMBL CD180145             [ATCATTGGAACAGAATTACCAACTTCACCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCAAAACCAAATAAAAATTTAACGAAAAAATTCTGTGAATCAATTAGCAACGTTGAAACCAATATCGAAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAAAATCGATCAGTCATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTTAA]




>consensus_6388#1
ATCATTGGAACAGAATTACCAACTTCACCAAGATCTCGTAGTTCACAAAAAATCAAAATA
ATCCATTTTATTCAAAACCAAATAAAAATTTAACGAAAAAATTCTGTGAATCAATTAGCA
ACGTTGAAACCAATATCGAAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAG
TTTCAAAAATGAAAAATCGATCAGTCATTCAGTTAACATTGGATCATTTGTTTTACGCAG
ACGTGCTAAACCGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAA
TACAAGAAGTTAA

consensusID : consensus_6388#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGATAGTCTTGACAGGTCTCTGTCTTATAGGTTTCACTGAAGCTTTCGGGATTTCAAGTGATTTACGAGAATTTGAACTAATGCTACGATTTTTTGGAAAGGATTGTGGATTAAGCTGGAGATTAGATATTTCCGAAGTACGGTTAGATTCAC]

[+] EMBL CD185480             [GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGATAGTCTTGACAGGTCTCTGTCTTATAGGTTTCACTGAAGCTTTCGGGATTTCAAGTGATTTACGAGAATTTGAACTAATGCTACGATTTTTTGGAAAGGATTGTGGATTAAGCTGGAGATTAGATATTTCCGAAGTACGGTTAGATTCAC]




>consensus_6388#2
GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGATAGTCTTGACAGGTCTCTGTCTTA
TAGGTTTCACTGAAGCTTTCGGGATTTCAAGTGATTTACGAGAATTTGAACTAATGCTAC
GATTTTTTGGAAAGGATTGTGGATTAAGCTGGAGATTAGATATTTCCGAAGTACGGTTAG
ATTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6388#0      GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCC 60
consensus_6388#1      --------------------------------ATCATTGGAACA-GAATTACCAACTTCA 27
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      TGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCA 120
consensus_6388#1      CCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCA--AAACCAAATAA 85
consensus_6388#2      -----------GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGA-TAGTCTTGACAG 48
                                  **         *        * *    *  *   *  *          

consensus_6388#0      AGAATCATTTATAAA--CCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGA 178
consensus_6388#1      AAATTTAACGAAAAAATTCTGTGAATCAATTAGCA-ACGTTGAAACCAATATCG------ 138
consensus_6388#2      GTCTCTGTCTTATAGGTTTCACTGA--AGCTTTCGGGATTTCAAGTGATTTACG------ 100
                                   *          *  *  *  *     **      * *   *      

consensus_6388#0      TCAAGAAAGTCTGCACCTGTCCAGT--CTACCAATACCAAAGATGAACTAGCAACTGGTG 236
consensus_6388#1      ----AAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAA 194
consensus_6388#2      -----AGAATTTGAACTAATGCTACGATTTTTTGGA-AAGGATTGTGGATTAAGCTGGAG 154
                           *     *   *     *      *      *  *             *  **   

consensus_6388#0      GTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAAC 296
consensus_6388#1      AATCG--ATCAGTC-ATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAAC 251
consensus_6388#2      ATTAGATATTTCCGAAGTACGGTTAGATTCAC---------------------------- 186
                        * *  **      *    *      *                                

consensus_6388#0      CGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTA-TACAAGAAGTT 355
consensus_6388#1      CGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTT 311
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      AAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATAT 415
consensus_6388#1      AA---------------------------------------------------------- 313
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      GCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTA 475
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      AACAATTTGCCTATAATATCCATTATGACAATATATTTATTCAGGCAAGCAACTTCTGTA 535
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      AAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCA 595
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      TTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAA 655
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      ATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAA 715
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      CAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTT 775
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      CGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCC 835
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      AATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTAT 895
consensus_6388#1      ------------------------------------------------------------
consensus_6388#2      ------------------------------------------------------------
                                                                                  

consensus_6388#0      AACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG 951
consensus_6388#1      --------------------------------------------------------
consensus_6388#2      --------------------------------------------------------