cluster # 639

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Schistosoma mansoni
cluster # 639 cluster # 639 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_639#0 length = 220 sequences # 1

consensus_639#1 length = 191 sequences # 1

consensusID : consensus_639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGGGTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGGAGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAACTTAAGGGAAACCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA]

[+] EMBL AI964703             [CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGGGTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGGAGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAACTTAAGGGAAACCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA]




>consensus_639#0
CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGGGT
GTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGGAG
GGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAACTTAAGGGAAACCC
CCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA

consensusID : consensus_639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence

                              [ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACTGGAAAAAGACGATGGGTGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGGAGGTTCTAATACTTGGCCAAATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAAACCCAATTATCTCT]

[+] EMBL AI964705             [ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACTGGAAAAAGACGATGGGTGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGGAGGTTCTAATACTTGGCCAAATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAAACCCAATTATCTCT]




>consensus_639#1
ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACTGGAAAAAGACGATGGGT
GTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGGAG
GTTCTAATACTTGGCCAAATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAAACC
CAATTATCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_639#0      --CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGG 58
consensus_639#1      ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACT-GGAAAAAGACGATGGG 59
                        ***************** ********************** ****************

consensus_639#0      GTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGG 118
consensus_639#1      -TGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGG 118
                      ***************  * ** ******** * ********** ***** ****** **

consensus_639#0      AGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAAC-TTAAGGGAAA 177
consensus_639#1      AGGTTCTAATACTTGGCCA-AATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAA 177
                     *** ** *  ***** *** *** ***    **  **  ********** ****** ***

consensus_639#0      CCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA 220
consensus_639#1      ACCCAATTATCTCT----------------------------- 191
                      *** ***