cluster # 6413

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Schistosoma mansoni
cluster # 6413 cluster # 6413 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6413#0 length = 539 sequences # 2

consensus_6413#1 length = 490 sequences # 2

consensusID : consensus_6413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 539
fasta sequence

                              [GCCCGGTACCCTGGCTTTGGTGGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTAG]

[+] EMBL CD168031             [GCCCGGTACCCTGGCTTTGGTGGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTAG]
[+] EMBL CD168096             [                                         AATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTA ]




>consensus_6413#0
GCCCGGTACCCTGGCTTTGGTGGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAA
TAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTA
TCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCT
GATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGG
TTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATA
GAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTT
TCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTG
TTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTT
AAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTAG

consensusID : consensus_6413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 490
fasta sequence

                              [GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCA-CCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCAT]

[+] EMBL CD164704             [GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCA CCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCA ]
[-] EMBL CD164647             [ GAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCGGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCAT]




>consensus_6413#1
GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTA
AGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAA
AGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCAT
TAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGC
GGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTG
CAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTT
CCTGGCCACCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGAT
TAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGAT
GTAGAGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6413#0      ------------------------------------------------------------
consensus_6413#1      GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTA 60
                                                                                  

consensus_6413#0      ------------------------------------------------------------
consensus_6413#1      AGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAA 120
                                                                                  

consensus_6413#0      ------------------------------------------------------------
consensus_6413#1      AGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCAT 180
                                                                                  

consensus_6413#0      --------------------------------------GCCCGGTACCCTGGCTTTG-GT 21
consensus_6413#1      TAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGC 240
                                                            **  *    ****       * 

consensus_6413#0      GGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTG 81
consensus_6413#1      GGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTG 300
                      *****  * ************ ********* ****************************

consensus_6413#0      CAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTT 141
consensus_6413#1      CAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTT 360
                      ************************************************************

consensus_6413#0      CCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGA 201
consensus_6413#1      CCTGGCCACC-ACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGA 419
                      ********** ******** ****************************************

consensus_6413#0      TTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGA 261
consensus_6413#1      TTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGA 479
                      ************************************************************

consensus_6413#0      TGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGA 321
consensus_6413#1      TGTAGAGTCAT------------------------------------------------- 490
                      ***********                                                 

consensus_6413#0      CTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAAC 381
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      TTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTT 441
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      AATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTT 501
consensus_6413#1      ------------------------------------------------------------
                                                                                  

consensus_6413#0      TGCATTGAACATATATCTATGTTCACTTGATCGGTTAG 539
consensus_6413#1      --------------------------------------