cluster # 6470

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6470 cluster # 6470 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6470#0 length = 431 sequences # 1

consensus_6470#1 length = 352 sequences # 3

consensusID : consensus_6470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTATAAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAATGCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAACGATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCAAAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAACATCATAAAGATATGCCACATTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGTTTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGATGATGTCGAATTT]

[+] EMBL CD197398             [TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTATAAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAATGCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAACGATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCAAAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAACATCATAAAGATATGCCACATTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGTTTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGATGATGTCGAATTT]




>consensus_6470#0
TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTAT
AAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAAT
GCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAAC
GATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCA
AAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAA
CATCATAAAGATATGCCACATTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGTT
TTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGATG
ATGTCGAATTT

consensusID : consensus_6470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 352
fasta sequence

                              [GAGCAACCTTGTCTATCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGGGGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGCTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACC]

[+] EMBL CD195792             [GAGCAACCTTGTCTATCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGGGGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTG                                                                                                                                                                                                  ]
[+] EMBL CD196891             [         gacggtTCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGTAGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGCTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACC]
[+] EMBL CD195746             [                                                                                                                                               TTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGTTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGAT                    ]




>consensus_6470#1
GAGCAACCTTGTCTATCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTAT
CATTGTGATCTGTATATTTGCTTTTACTTATGTTGGGGAAGGTTCTTGGAATGTTACTAT
AAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTGACAAATATGATGTGATATACAT
TAATGGACGTAATTTAACATCTTCAGTACATGTGCTTATAACAGCATCAGAACGCTTTTC
TCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATG
GGATCATTTAAATGTTTCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6470#0      TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTAT 60
consensus_6470#1      ------------------------------------GAGCAACCTTGTCTATCATACTA- 23
                                                           **  *  *  ***   **  ** 

consensus_6470#0      AAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAAT 120
consensus_6470#1      GTCGTACTAGCGTGTCATCAACCATGTCA-AATTTTATCATTGTGATCTGTATATTTGCT 82
                          * ** *  * * ** *   ** * *  ** * * ***    ** * *        *

consensus_6470#0      GCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAAC 180
consensus_6470#1      TTTACTTATGTTGGGGAAGGTTCTTGGAATG---TTACTATAAATCACAATCCAAATTGT 139
                        *  * *  ** *   *  *  **  ****    **     ** *  *** ****    

consensus_6470#0      GATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCA 240
consensus_6470#1      AATCTTTCGAAAGAATGTGACAAATATG-ATGTGATAT-ACAT-TAATGGACGTAATTT- 195
                       **  ***   *   * ***  *  **  ** *** ** ****  ******  ** *   

consensus_6470#0      AAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAA 300
consensus_6470#1      --AACATCTTCAGTACATGTGC---TTATAAC--AGCATCAGAACGCTTTTCTCTCCCAT 248
                        **   *****  * *** **   **** *   **  **  *       *    * ** 

consensus_6470#0      CATCATAAAGATATGCCACA-TTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGT 359
consensus_6470#1      CA--ATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCA 306
                      **  **   ***    **** ** ** *  * ** **  *    *  *  ***  ***  

consensus_6470#0      TTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGAT 419
consensus_6470#1      TTTAAATGTTTCTTCTGGAAAA-AGATTAACTGTCGGTAATGTGACC------------- 352
                      ****  *  *  **     *   *  ****     *   ** **                

consensus_6470#0      GATGTCGAATTT 431
consensus_6470#1      ------------