cluster # 6504

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Schistosoma mansoni
cluster # 6504 cluster # 6504 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6504#0 length = 481 sequences # 3

consensus_6504#1 length = 109 sequences # 1

consensusID : consensus_6504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 481
fasta sequence

                              [AATGAAGATCCCTATGAGAATGAAGGAGTACTAAATGATCCACAATTCTGAGAAGAGAACAACTTCATATTGACTAAAGATGAAATACAATTGTTTACAGAATACTTCACTACTGGCAGTCATAATGGTGTTGATGGTGATGATCAATGTTAGTTATTCACATGCAATTCATGCAAACCATTATGACGATAATGATCTAGTAACTGATTCACTTGATGATAACGAATATGAGGATGAAAATGGAGCTGGTGATTATGATGAAAATGAAGATACCTATGAAAATGAAGGAGTATTAAATGATCCACAATTCTATAGAAGAGGACATTATAACGAATAAGATAGGTTTTTATATTTGGCAAGTTTGCTTACCAACCATTCAGGATTGTATCTTTTAAAATGTAACAAATGACAGTTTGATATCTTACAGTGAATAAATATGTAATAGTACAATAAATCAATTTGCATTGCTTTTCAAAAAAAA]

[-] EMBL CD196204             [AATGAAGATCCCTATGAGAATGAAGGAGTACTAAATGATCCACAATTCTGAGAAGAGAACAACTTCATATTGACTAAAGATGAAATACAATTGTTTACAGAATACTTCACTACTGGCAGTCATAATGGTGTTGATGGTGATGATCAATGTTAGTTATTCACATGCAATTCATGCAAACCATTATGACGATAATGATCTAGTAACTGATTCACTTGATGATAACGAATATGAGGATGAAAATGGAGCTGGTGATTATGATGAAAATGA                                                                                                                                                                                                                      ]
[+] EMBL AF030963             [                                                                 CATATGGACTAAAGATGAAATACAATTGTTTACAGAATACTTCACTACTGGCAGTCATAATGGTGTTGATGGTGATGATCAATGTTAGTTATTCACATGCAATTCATGCAAACCATTATGACGATAATGATCTAGTAACTGATTCACTTGATGATAACGAATATGAGGATGAAAATGGAGCTGGTGATTATGATGAAAATGAAGATACCTATGAAAATGAAGGAGTATTAAATGATCCACAATTCTATAGAAGAGGACATTATAACGAATAAGATAGGTTTTTATATTTGGCAAGTTTGCTTACCAACCATTCAGGATTGTATCTTTTAAAATGTAACAAATGACAGTTTGATATCTTACAGTGAATAAATATGTAATAGTACAATAAATCAATTTGCATTGCTTTTCAAAAAAAA]
[-] EMBL AA999618             [                                                                                                                                                                                                                                                                                             gGGGGTATTAAATNATCCNCAATTCTATAGAAGAGGACATTATAACGAATAAGATAGGTTTTTATATTTGGCAAGTTTGCTTACCAACCATTCAGGATTGTATCTTTTAAAATGTAACAAATGACAGTTTGATATCTTACAGTGAATAAATATGTAATAGTACAATAAA                           ]




>consensus_6504#0
AATGAAGATCCCTATGAGAATGAAGGAGTACTAAATGATCCACAATTCTGAGAAGAGAAC
AACTTCATATTGACTAAAGATGAAATACAATTGTTTACAGAATACTTCACTACTGGCAGT
CATAATGGTGTTGATGGTGATGATCAATGTTAGTTATTCACATGCAATTCATGCAAACCA
TTATGACGATAATGATCTAGTAACTGATTCACTTGATGATAACGAATATGAGGATGAAAA
TGGAGCTGGTGATTATGATGAAAATGAAGATACCTATGAAAATGAAGGAGTATTAAATGA
TCCACAATTCTATAGAAGAGGACATTATAACGAATAAGATAGGTTTTTATATTTGGCAAG
TTTGCTTACCAACCATTCAGGATTGTATCTTTTAAAATGTAACAAATGACAGTTTGATAT
CTTACAGTGAATAAATATGTAATAGTACAATAAATCAATTTGCATTGCTTTTCAAAAAAA
A

consensusID : consensus_6504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence

                              [AATTCGGCNCGAGGGCAGTCATAATGGTGTNGATGGTGATGATCAATGTTANTTATTCACATGCAATNCANGCAAACCATTATGACGATAATGATCTNTTAACTGATTC]

[+] EMBL AA559692             [AATTCGGCNCGAGGGCAGTCATAATGGTGTNGATGGTGATGATCAATGTTANTTATTCACATGCAATNCANGCAAACCATTATGACGATAATGATCTNTTAACTGATTC]




>consensus_6504#1
AATTCGGCNCGAGGGCAGTCATAATGGTGTNGATGGTGATGATCAATGTTANTTATTCAC
ATGCAATNCANGCAAACCATTATGACGATAATGATCTNTTAACTGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6504#0      AATGAAGATCCCTATGAGAATGAAGGAGTACTAAATGATCCACAATTCTGAGAAGAGAAC 60
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      AACTTCATATTGACTAAAGATGAAATACAATTGTTTACAGAATACTTCACTACTGGCAGT 120
consensus_6504#1      ----------------------------------------AATTCGGCNCGAG-GGCAGT 19
                                                              *** *  * * *  ******

consensus_6504#0      CATAATGGTGTTGATGGTGATGATCAATGTTAGTTATTCACATGCAATTCATGCAAACCA 180
consensus_6504#1      CATAATGGTGTNGATGGTGATGATCAATGTTANTTATTCACATGCAATNCANGCAAACCA 79
                      *********** ******************** *************** ** ********

consensus_6504#0      TTATGACGATAATGATCTAGTAACTGATTCACTTGATGATAACGAATATGAGGATGAAAA 240
consensus_6504#1      TTATGACGATAATGATCTNTTAACTGATTC------------------------------ 109
                      ******************  **********                              

consensus_6504#0      TGGAGCTGGTGATTATGATGAAAATGAAGATACCTATGAAAATGAAGGAGTATTAAATGA 300
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      TCCACAATTCTATAGAAGAGGACATTATAACGAATAAGATAGGTTTTTATATTTGGCAAG 360
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      TTTGCTTACCAACCATTCAGGATTGTATCTTTTAAAATGTAACAAATGACAGTTTGATAT 420
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      CTTACAGTGAATAAATATGTAATAGTACAATAAATCAATTTGCATTGCTTTTCAAAAAAA 480
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      A 481
consensus_6504#1      -