cluster # 6558

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Schistosoma mansoni
cluster # 6558 cluster # 6558 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6558#0 length = 735 sequences # 3

consensus_6558#1 length = 289 sequences # 1

consensusID : consensus_6558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 735
fasta sequence

                              [ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAATAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAACAGTTAAAAGGCTCCATTGGTTAATGTATTATTTTTGACACATGACCAGAAGGATGGCAAGCTAACCAACTAATTGGCTACGTTCACTGAAAAATGTTAAAGATTAGCATTACTCACTCGGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATACGAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGGATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAACATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCATGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATTGTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTTGAGGTGCTACAAACTAC]

[-] EMBL CD067024             [ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAATAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAACAGTTAAAAGGCTCCATTGGTTAATGTATTATTTTTGACACATGACCAGAAGGATGGCAAGCTAACCAACTAATTGGCTACGTTCACTGAAAAATGTTAAAGATTAGCATTACTCACTCGGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTc                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD169236             [                                                                                                                                                                                                                                          gaTCGGTAGATCTCTGGCGGGATACC TTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATACGAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGGATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAACATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCATGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATTGTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTTGAGGTGCTACAAACTAC]
[-] EMBL CD067025             [                                                                                                                                                                                                                                                                         AAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGCTA                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_6558#0
ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAA
TAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAAC
AGTTAAAAGGCTCCATTGGTTAATGTATTATTTTTGACACATGACCAGAAGGATGGCAAG
CTAACCAACTAATTGGCTACGTTCACTGAAAAATGTTAAAGATTAGCATTACTCACTCGG
TAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCT
GATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGT
TGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATACGA
GCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGGAT
TTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAACA
TTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCATG
CATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATTGT
CTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTTGA
GGTGCTACAAACTAC

consensusID : consensus_6558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATGTTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATCGGTAGATCTCTGGCGGGATACCTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGCCTCGTGCCGAATTCTGGCCGTC]

[-] EMBL CD077783             [CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATGTTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATCGGTAGATCTCTGGCGGGATACCTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGCCTCGTGCCGAATTCTGGCCGTC]




>consensus_6558#1
CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATGTTTGTACTCATGT
TCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATCGGTAGATCTCTGG
CGGGATACCTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTCCTGATAACCGTTAT
TAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGTGTTGGAAACTACAG
TAGGTTCGACAAAATTCTAAATAGCGCCTCGTGCCGAATTCTGGCCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6558#0      ATTGTGTCTAAATAGGGGGATTCCATATTTACATTGTAACGAAATCTGAATGGATGAAAA 60
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      TAACATAACGGCTAGCTCACAAATAGAAAACGCACAACCTAATACACAACTCAGCCAAAC 120
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      AGTTAAAAGGCTCCATTGGTTAA-TGTATTATTTTTGACACATGACCAGAAGGATGGCAA 179
consensus_6558#1      -------------CAGCAGTTGAGCCTGCCAATAAGGATATAAGATGTGCATGATTAATG 47
                                   **   *** *   *   * *   ** * * **   * * ***     

consensus_6558#0      GCTAACCAACTAATTGGCTACGTTCACTGAAAA-ATGTTAAAGATTAGCATTACTCACTC 238
consensus_6558#1      TTTGTACTCATGTTCAATTAAGGATGATAAAGTTACAGTCCGTTTTCATACAAGATAATC 107
                        *   *   *  *    ** *     * **   *   *     **   *  *   * **

consensus_6558#0      GGTAGATCTCTGGCGGGATACCTTTTGAAATAACTCCTAAGGCTTCGTAAATCACTCGTC 298
consensus_6558#1      GGTAGATCTCTGGCGGGATACCTTT-GAAATAACTCCTAAGGCTTCGTAAATCACTCGTC 166
                      ************************* **********************************

consensus_6558#0      CTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGT 358
consensus_6558#1      CTGATAACCGTTATTAGATAACTCCCAACGGCCCATAAATTTCCGAAGATAATACGGGGT 226
                      ************************************************************

consensus_6558#0      GTTGGCTACAGTTAACCGTACAGCGCAGATCACAAAACCACAAGTACACAAGGTGAATAC 418
consensus_6558#1      GTTGGAAACTACAGTAGGTTCGACAAAATTCTAAATAGCGC-----CTCGTGCCGAATTC 281
                      *****  **        ** *  *  *  **  ** * * *     * *  *  **** *

consensus_6558#0      GAGCAGAAAGATGAATGCAGGCGAGCACCAGCGGGCAAGAAAGGGCAAATAAATTATAGG 478
consensus_6558#1      TGGCCGTC---------------------------------------------------- 289
                        ** *                                                      

consensus_6558#0      ATTTAGGAAGCACATATATATGGGGAAGCGAATGAGTCGTCAAGCGATCTAAGCAACTAA 538
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      CATTTAAGCTAGTAAGAGGGATGTGTTAGACTGTAACACATGATCAACCATACATGCTCA 598
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      TGCATATGTAGTGATTATAATACAAAGACATAGACGAATCGTTACTGTCCGAATGACATT 658
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      GTCTGTTAAATAAATTCACCGAAGGGCTTGACAAAATTAAACGTACATAGACTCAAGTTT 718
consensus_6558#1      ------------------------------------------------------------
                                                                                  

consensus_6558#0      GAGGTGCTACAAACTAC 735
consensus_6558#1      -----------------