cluster # 6567

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Schistosoma mansoni
cluster # 6567 cluster # 6567 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6567#0 length = 710 sequences # 2

consensus_6567#1 length = 514 sequences # 1
consensus_6567#2 length = 218 sequences # 1

consensusID : consensus_6567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence

                              [TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTATCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATTCGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAATGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACGAAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGACTCGTACTCCCTTTGTCGATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATCCAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATCGTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTATTGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAAAAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC]

[+] EMBL CD195162             [TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTATCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATTCGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAATGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACGAAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGACTCGTACTCCCTTTGTCGATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATCCAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATCGTGTGAGACA                                                                                                                                                                          ]
[-] EMBL CD067440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAATTCAAGTGAATTATATCAGTTGGGACTGTATTTAAAAAACTTCGATCGTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTATTGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAAAAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC]




>consensus_6567#0
TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTA
TCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATT
CGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAA
TGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGT
CGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGC
TTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACGAAATTTATCTATAAAT
TGCTGTATATGCTCTCGTTCAGCTTTCAATGACTCGTACTCCCTTTGTCGATTTAGCAAT
CTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATCCAAACGCTTG
CAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATCGTGTGAGACA
ATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTATTGCGCGCATA
TCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAAAAGTGCTTGT
GCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC

consensusID : consensus_6567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TTCCACATCTAGATGATTTGTCGGTTCATCGAGAACAAGCAAATTTGGACTGGACATACACATAGCAACAAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGATTGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTGTTCAGTCTGGTTTGGGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATCCAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCTGCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGATTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTTTTAATTCT]

[+] EMBL CD202043             [TTCCACATCTAGATGATTTGTCGGTTCATCGAGAACAAGCAAATTTGGACTGGACATACACATAGCAACAAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGATTGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTGTTCAGTCTGGTTTGGGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATCCAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCTGCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGATTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTTTTAATTCT]




>consensus_6567#1
TTCCACATCTAGATGATTTGTCGGTTCATCGAGAACAAGCAAATTTGGACTGGACATACA
CATAGCAACAAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGATTGGTTGAAG
AGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTGTTCAGTCTG
GTTTGGGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATCCAGCTGGTCAAC
ATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCGTAATCCTGAAGT
CGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCTGCACCATTTTCACC
AACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGATTTAAAATTGGTTT
GTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGAGGAGAAAGTTTCTC
ACAATCTGGCAGTCGAATCACAACTTTTAATTCT

consensusID : consensus_6567#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence

                              [TCTGGCAGTCGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCC]

[-] EMBL CD190477             [TCTGGCAGTCGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCC]




>consensus_6567#2
TCTGGCAGTCGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTT
TCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTT
ATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGAACTGCGATGTGCGTGGCG
TAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6567#0      TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTA 60
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      ------------------------------------------------------------
                                                                                  

consensus_6567#0      TCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATT 120
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      -----------------------------------------------------------T 1
                                                                                  

consensus_6567#0      CGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAA 180
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      TCCACATCTAGATGATTTGTCGGTTCATCGAGAAC--AAGCAAATTTGGACTGGACATAC 59
                                                                                  

consensus_6567#0      TGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGT 240
consensus_6567#2      ---------------------------------------------------TCTGGCAGT 9
consensus_6567#1      ACATAGCAAC--------AAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGAT 111
                                                                          **  *  *

consensus_6567#0      CGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGC 300
consensus_6567#2      CGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGC 69
consensus_6567#1      TGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTG 171
                       *  * *  *      ***    **     * ****         *        ** *  

consensus_6567#0      TTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACG-AAATTTATCTATA-- 357
consensus_6567#2      TTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATA-- 127
consensus_6567#1      TTCAGTCTGGTTTG---GGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATC 228
                      ** * ***  ****   *     * * * *     *** **       *   * ** *  

consensus_6567#0      -AATTGCTGTATATGCTCTCGTTCAGCTT--TCAATG----ACTCGTACTCCCTTTGTCG 410
consensus_6567#2      -AATTGCTGTATATGCTCTCGTTCAGCTT--TCAATG----AACTGCGATGTGCGTGGCG 180
consensus_6567#1      CAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCG 288
                       *  ** *  * *** * * *   *   *   ****     *   *   *     ** **

consensus_6567#0      ATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATC 470
consensus_6567#2      TAATCCTGAAG--TCGGTTCTAACTCACCTAGAAGAAGCC-------------------- 218
consensus_6567#1      TAATCCTGAAG--TCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCT 346
                         *    *    ** *  * * **  *  * *** * *                     

consensus_6567#0      CAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATC 530
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      GCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGA 406
                                                                                  

consensus_6567#0      GTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTAT 590
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      TTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGA 466
                                                                                  

consensus_6567#0      TGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAA 650
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      GGAGAAAGTTTCTCACAATCTGGCAG-TCGAATCACAACTTTTAATTCT----------- 514
                                                                                  

consensus_6567#0      AAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC 710
consensus_6567#2      ------------------------------------------------------------
consensus_6567#1      ------------------------------------------------------------